GiESCO 2019 banner
IVES 9 IVES Conference Series 9 GiESCO 9 GiESCO 2019 9 Data mining approaches for time series data analysis in viticulture. Potential of the bliss (Bayesian functional linear regression with sparse step functions) method to identify temperature effects on yield potential

Data mining approaches for time series data analysis in viticulture. Potential of the bliss (Bayesian functional linear regression with sparse step functions) method to identify temperature effects on yield potential

Abstract

Context and purpose of the study – Vine development, and hence management, depends on dynamic factors (climate, soil moisture, cultural practices etc.) whose impact can vary depending upon their temporal modalities (timing, duration, threshold, eventually trajectory and memory effects). Therefore, understanding the effect of the temporal variation of these factors on grapevine physiology would be of strategic benefit in viticulture, for example in establishing yield potential. Today many estates own data that can support temporal analyses, while the emergence of precision viticulture allows management at higher spatial and temporal resolutions. These data are a great opportunity to advance knowledge about the dynamics of grapevine physiology and production, and promote an improved precision of vineyard practices. The exploitation of these data needs analytical methods that fully explore time series data. However, current methods tend to only focus on a few key phenological stages or time steps. Such approaches do not fully address the potential information captured by continuous temporal measurements because they introduce limitations : i) they rely on choices of variables and timing, ii) they often require suppressing data or analysing only parts of a time series and iii) data correlation over time is not taken into account. A new approach is explored in this paper, using a Bayesian functional Linear regression with Sparse Steps functions (BLiSS method). The BLiSS method overcomes the mentioned limitations and leads to a more complete and objective analysis of time series data. Based on the identification of climatic periods affecting yield, the objective of the study is to evaluate the potential of the BLiSS method.

Materials and method ‐ Minimum and maximum daily temperatures during the year preceding the harvest year were regressed against the number of clusters per vine using the BLiSS method on one block of a commercial vineyard in the Bordeaux region over 11 years. The reliability and pertinence of the BLiSS method to reveal already reported, ignored or underestimated temperature effects on the number of clusters per vine are tested by comparison with literature results.

Results ‐ The BLiSS method allowed the detection of periods when temperature influenced the number of clusters per vine during the year preceding the harvest year. Some of the detected periods of influence had already been reported in literature. However, the BLiSS outcomes suggested that some of those known periods may have a different duration or several effects, thus challenging actual knowledge. Finally, some new periods of influence were identified by the BLiSS method. These results confirmed the potential of the BLiSS method to undertake a fuller exploration of time series data in the case of climate influence on grape yield.

DOI:

Publication date: June 22, 2020

Issue: GiESCO 2019

Type: Article

Authors

Cécile LAURENT (1,2,3), Meïli BARAGATTI (4), James TAYLOR (1), Bruno TISSEYRE (1), Aurélie METAY (2), Thibaut SCHOLASCH (3)

(1) ITAP, Univ. Montpellier, Montpellier SupAgro, Irstea, France
(2) SYSTEM, Univ Montpellier, CIHEAM-IAMM, CIRAD, INRA, Montpellier SupAgro, France
(3) Fruition Sciences, Montpellier, France
(4) MISTEA, Univ Montpellier Montpellier SupAgro, INRA, France

Contact the author

Keywords

climate, functional analysis, temporal variability, cluster number

Tags

GiESCO 2019 | IVES Conference Series

Citation

Related articles…

Elucidating vineyard site contributions to key sensory molecules: Identification of correlations between elemental composition and volatile aroma profile of site-specific Pinot noir wines

The reproducibility of elemental profile in wines produced across multiple vintages has been previously reported using grapes from a single scion clone of Vitis vinifera L. cv. Pinot noir. The grapevines were grown on fourteen different vineyard sites, from Oregon to southern California in the U.S.A., which span distances from approximately hundreds of meters to 1450 km, while elevations range from near sea level to nearly 500 m. In addition, sensorial (i.e. aroma, taste, and mouthfeel) and chemical (i.e. polyphenolic and volatile) differences across the different vineyard sites have also been observed among these wines at two aging time points. While strong evidence exists to support that grapes grown in different regions can produce wines with unique chemical and sensorial profiles, even when a single clone is used, the understanding of growing site characteristics that result in this reproducible differentiation continues to emerge. One hypothesis is that the elemental profile that a vineyard site imparts to the grape berries and the resulting wine is an important contributor to this differentiation in chemistry and sensory of wines. For example, various classes of enzymes that catalyze the formation of key aroma compounds or their precursors require specific metals. In this work, we begin to report correlations between elemental and volatile aroma profiles of site-specific Pinot noir wines, made under standardized winemaking conditions, that have been previously shown to be distinguished separately by these chemical analyses.

Short-term relationships between climate and grapevine trunk diseases in southern French vineyards

[lwp_divi_breadcrumbs home_text="IVES" use_before_icon="on" before_icon="||divi||400" module_id="publication-ariane" _builder_version="4.19.4" _module_preset="default" module_text_align="center" module_font_size="16px" text_orientation="center"...

Phenological characterization of a wide range of Vitis Vinifera varieties

In order to study the impact of climate change on Bordeaux grape varieties and to assess the adaptation capacities of candidates to the grape varieties of this wine region to the new climatic conditions, an experimental block design composed of 52 grape varieties was set up in 2009 at the INRAE Bordeaux Aquitaine center. Among the many parameters studied, the three main phenological stages of the vine (budburst, flowering and veraison) have been closely monitored since 2012. Observations for each year, stage and variety were carried out on four independent replicates. Precocity indices have been calculated from the data obtained over the 2012-2021 period (Barbeau et al. 1998). This work allowed to group the phenological behaviour of the grapevine varieties, not only based on the timing of the subsequent developmental stages, but also on the overall precocity of the cycle and the total length of the cycle between budburst and veraison. Results regarding the variability observed among the different grape varieties for these phenological stages are presented as heat maps.

Impact of changes in pruning practices on vine growth and yield

A gradual decline in vineyards has been observed over the past twenty years worldwide. This might be explained by the climate change, practices change or the increase of dieback diseases. To increase the longevity of vines, we studied the impact of different pruning strategies in four adult and four young vineyards located in France and Spain. In France, vineyards were planted with Cabernet franc on 3309C while Spanish trials were planted with Tempranillo grafted on 110R. Vegetative expression, yield, quality of berries and wood vessels conductivity were measured. The distribution of vegetative expression, yield and berry composition between primary and secondary vegetation were quantified. Finally, tomography was used to evaluate the implication of the treatments on sap flows.
First results show that i) the respectful pruning leads to an increase of 30 to 50% more secondary shoots than the aggressive pruning in France and between 15 and 20% in Spain, ii) there is no major effect on the yield over the first two years following the implementation of the new pruning practices, although the proportion of clusters from suckers is higher on the respectful pruning method. On young vines, the development of the trunk according to a respectful pruning leads to a loss of harvest 2 years after planting. This is due to the removal, on the future trunk, of the green suckers which carrying bunches. This operation carried out in spring rather than during winter pruning, would promote a better leaf / fruit balance when the plant comes into production, and could lead to better hydraulic conduction in the vessels of the trunk. Maintaining these trials for several years will provide more robust data to assess the impact of these practices on the vines over the long term.

Exploring resilience and competitiveness of wine estates in Languedoc-Roussillon in the recent past: a multi-level perspective

The Languedoc-Roussillon wineries are facing a decline in wine yields particularly PGI yields due to many factors. Climate change is just ones, but is expected to increase in the future. There is also structurally a large heterogeneity of yield profiles among terroirs, varieties and strategies. This work investigates the link between yield, competitiveness and resilience to explore how resilient winegrowers have been in the recent past. To this end two approaches have been combined; (i) an accountancy database analysis at estate scale and (ii) municipality level competitiveness analysis. A new resilience indicator that characterizes the capacity of an estate to absorb yield variation is also defined. The FADN database between 2000 and 2018 of ex-Languedoc-Roussillon (France) and other data are used to analyse the current situation and the past evolution of competitiveness and resilience by type of estate (type of farm: PGI and/or PDO & type of commercialization: bulk and/or bottles). The net margin, which defines competitiveness, is not correlated to yield for all types but depends on the type of commercialization and the level of specialisation. The resilience indicator shows that the net margin of estates specialized in PGI is particularly sensitive to yield declines. We also show that price evolutions seem to compensate the effect of yield losses for the majority of types. Municipality scale analysis shows the links between local pedoclimate, yield, commercialization strategies and price. Overlapping a PDO with a PGI does not always increase a municipality’s PGI competitiveness. It is difficult to make links between causes and effects due to the complexity of the wine production system. Production diversification may be a solution. Resorting to the two level of analysis helps resolving the data gap that is necessary to explore the links between yield and economic performance of the wine estates in the long term.