terclim by ICS banner
IVES 9 IVES Conference Series 9 Data deluge: Opportunities, challenges, and lessons of big data in a multidisciplinary project

Data deluge: Opportunities, challenges, and lessons of big data in a multidisciplinary project

Abstract

Grapevine powdery mildew resistance is a key target for grape breeders and grape growers worldwide. The driver of the USDA-NIFA-SCRI VitisGen3 project is completing the pipeline from germplasm identification to QTL to candidate gene characterization to new cultivars to vineyards to consumers. This is a common thread across such projects internationally. We will discuss how our objectives and approaches leverage big data to advance this initiative, starting with genomics and computer vision phenotyping for gene discovery and genetic improvement. To manage and maintain resistances for long-term sustainability, growers will be trained through our nation-wide extension and outreach plan. Ultimately, consumers drive adoption of new varieties, and our socioeconomic research using eye-tracking will be briefly described. Across this multi-disciplinary research effort, big data presents opportunities, challenges, and lessons.

DOI:

Publication date: June 13, 2024

Issue: Open GPB 2024

Type: Article

Authors

Lance Cadle-Davidson1,2*, Matt Clark3, Dario Cantu4,5, Chengyan Yue3,6, Kaitlin Gold2, Yu Jiang2, Qi Sun7, Kate Fessler3

1 USDA-ARS Grape Genetics Research Unit, Geneva, NY, USA
2 School of Integrative Plant Science, Cornell AgriTech, Cornell University, Geneva, NY, USA
3 Department of Horticultural Science, Univ. of Minnesota, Saint Paul, MN, USA
4 Department of Viticulture and Enology, University of California Davis, Davis, CA, USA
5 Genome Center, University of California Davis, Davis, CA, USA
6 Department of Applied Economics, Univ. of Minnesota, Saint Paul, MN, USA
7 BRC Bioinformatics Facility, Institute of Biotechnology, Cornell University, Ithaca, NY, USA

Contact the author*

Keywords

Disease resistance, Grape breeding, Genomics, Computer vision, Consumer behavior

Tags

IVES Conference Series | Open GPB | Open GPB 2024

Citation

Related articles…

Optimization of in vitro establishment of grapevine varieties for fast micropropagation 

Micropropagation is an important alternative to conventional methods of plant propagation. The objective of this study was to optimize a protocol for in vitro micropropagation of selected grapevine hybrids (H19 and H20) that are included in our breeding program. For the sprouting initiation experiment, nodal cuttings with only one axillary bud from two hybrids were separated, disinfected, and cultivated in 50% Murashige Skoog nutrient medium (½ MS) and Woody Plant Medium (WPM), adding 4.4 µM benzyladenine (BA) in both mediums.

Les micro-zones et les technologies traditionnelles de la viniculture en Géorgie

La Géorgie est un pays d’une tradition très ancienne de viticulture et de viniculture. Là, dans les micro zones spécifiques, en précisant le lieu on produit de différents types du vin d’une

Differential gene expression and novel gene models in 110 Richter uncovered through RNA Sequencing of roots under stress

The appearance of the Phylloxera pest in the 19th century in Europe caused dramatical damages in grapevine diversity. To mitigate these losses, grapevine growers resorted to using crosses of different Vitis species, such as 110 Richter (110R) (V. berlandieri x V. rupestris), which has been invaluable for studying adaptations to stress responses in vineyards. Recently, a high quality chromosome scale assembly of 110R was released, but the available gene models were predicted without using as evidence transcriptional sequences obtained from roots, that are crucial organs in rootstock, and they may express certain genes exclusively. Therefore, we employed RNA sequencing reads of 110R roots under different stress conditions to predict new gene models in each haplotype of 110R under different stresses.

Evidence of successful wine business strategies: customer acquisition, value or retention?

This presentation illustrates a series of successful wine businesses, which have managed to counter the downward trend impacting the global industry. How these businesses have been successful is explained through the planning and execution of strategies that focused on a clear and consistent aim in attracting new consumers. These cases add weight to the ehrenbergian position that for a business to be successful it must target new customers as a priority over alternative options like increasing value or improving customer retention.

Evaluation of winegrape anthocyanins in the vineyard using a portable fluorimetric sensor: seasonal and water regime effects

Accumulation of anthocyanins (Anth) on whole winegrape (Vitis vinifera L.) bunches attached to the vine was monitored by a fluorescence-based sensor (Multiplex) on ‘Aleatico’ and ‘Nero d’Avola’. Different water regimes were applied.