terclim by ICS banner
IVES 9 IVES Conference Series 9 Data deluge: Opportunities, challenges, and lessons of big data in a multidisciplinary project

Data deluge: Opportunities, challenges, and lessons of big data in a multidisciplinary project

Abstract

Grapevine powdery mildew resistance is a key target for grape breeders and grape growers worldwide. The driver of the USDA-NIFA-SCRI VitisGen3 project is completing the pipeline from germplasm identification to QTL to candidate gene characterization to new cultivars to vineyards to consumers. This is a common thread across such projects internationally. We will discuss how our objectives and approaches leverage big data to advance this initiative, starting with genomics and computer vision phenotyping for gene discovery and genetic improvement. To manage and maintain resistances for long-term sustainability, growers will be trained through our nation-wide extension and outreach plan. Ultimately, consumers drive adoption of new varieties, and our socioeconomic research using eye-tracking will be briefly described. Across this multi-disciplinary research effort, big data presents opportunities, challenges, and lessons.

DOI:

Publication date: June 13, 2024

Issue: Open GPB 2024

Type: Article

Authors

Lance Cadle-Davidson1,2*, Matt Clark3, Dario Cantu4,5, Chengyan Yue3,6, Kaitlin Gold2, Yu Jiang2, Qi Sun7, Kate Fessler3

1 USDA-ARS Grape Genetics Research Unit, Geneva, NY, USA
2 School of Integrative Plant Science, Cornell AgriTech, Cornell University, Geneva, NY, USA
3 Department of Horticultural Science, Univ. of Minnesota, Saint Paul, MN, USA
4 Department of Viticulture and Enology, University of California Davis, Davis, CA, USA
5 Genome Center, University of California Davis, Davis, CA, USA
6 Department of Applied Economics, Univ. of Minnesota, Saint Paul, MN, USA
7 BRC Bioinformatics Facility, Institute of Biotechnology, Cornell University, Ithaca, NY, USA

Contact the author*

Keywords

Disease resistance, Grape breeding, Genomics, Computer vision, Consumer behavior

Tags

IVES Conference Series | Open GPB | Open GPB 2024

Citation

Related articles…

Implications of herbicide, cultivation or cover crop under-vine soil management on the belowground microbiote

Soil management through cover crops in the lines of the vineyards is a common practice in viticulture, since it improves the characteristics of the soil. It has been shown that the cover crops can influence the cycle of nutrients, promote infiltration, decrease erosion, and enhance the soil microbiota biodiversity improving the grapevines. However, the area under the vines tends to be left bare by applying herbicides or tillage to avoid competition with the crop in hot climates. The use of cover crops under the vines might be a plausible alternative to the use of herbicides or cultivation, improving grapevine quality and soil characteristics. The aim of this research was to study the implications of different management of the soil under the vines (herbicide, cultivation or cover crops) on grapevine growth, water and nutritional status and belowground microbial communities.

Colour assessment of port wines using colorimetric and spectrophotometric methods

Colour is an important quality parameter in wines and is the result of a complex mixture of pigments
(including anthocyanins and their derivatives, quinones, xanthyllium compounds, etc.). Red wine colour changes over time as pigments react between themselves and with other wine macromolecules
(particularly polyphenols). During wine tasting, colour is normally assessed on the outer rim of the wine profile in a tilted glass, since most wines are too opaque to be analysed in the middle of the glass. Therefore, depending on the depth of observation considered, the perception of wine colour can be different.

Polysaccharides and glycerol production by non-Saccharomyces wine yeasts in mixed fermentation

A great variability in the amount of polysaccharides recovered at the end of fermentations carried out by pure cultures of 89 non-Saccharomyces yeasts was observed. The utilization of the best polysaccharides producers in mixed cultures with S. cerevisiae resulted in considerable increases in the final concentration of polysaccharides and showed a strain dependent effect on glycerol production as compared to pure culture of S. cerevisiae.

White grape must processed by UHPH as an alternative to SO2 addition: Effect on the phenolic composition in three varieties

The quantity and distribution of polyphenols in musts play a fundamental role in the white winemaking. This is because these substances are exposed to oxidation reactions, which are catalysed by the polyphenol oxidase (PPO), leading to a decrease in the quality of the wines produced. PPO is inactivated by SO2, but currently, due to the restrictions of the legislation, other methodologies are being investigated. Ultra-High Pressure Homogenization (UHPH) is a non-thermal physic technology that exerts an ultrahigh pressure pumping (>200 MPa) of a fluid through a valve in a continuous system.

Determination of target compounds in cava quality using liquid chromatography. Application of chemometric tools in data analysis

According to the Protected Designation of Origin (PDO), Cava is protected in the quality sparkling wines made by the traditional Champenoise method were the wine realize a second fermentation inside the own bottle1. Geographical and human peculiarities of each bottle are the main way for the final quality2. The aim of this study is to find correlations and which target compounds are the most representative of the quality of two different grape varieties, Pinot Noir and Xarel·lo. The quality of these two types of grapes is being studied for each variety by a previous classification of the vineyard made by the company who provided the samples (qualities A,B,C,D, being A the better one and D the worst one). The target compounds studied are organic acids and polyphenols. The methodology for the determination of organic acids is HPLC-UV/vis and for some of them the enzymatic methodology.