terclim by ICS banner
IVES 9 IVES Conference Series 9 Data deluge: Opportunities, challenges, and lessons of big data in a multidisciplinary project

Data deluge: Opportunities, challenges, and lessons of big data in a multidisciplinary project

Abstract

Grapevine powdery mildew resistance is a key target for grape breeders and grape growers worldwide. The driver of the USDA-NIFA-SCRI VitisGen3 project is completing the pipeline from germplasm identification to QTL to candidate gene characterization to new cultivars to vineyards to consumers. This is a common thread across such projects internationally. We will discuss how our objectives and approaches leverage big data to advance this initiative, starting with genomics and computer vision phenotyping for gene discovery and genetic improvement. To manage and maintain resistances for long-term sustainability, growers will be trained through our nation-wide extension and outreach plan. Ultimately, consumers drive adoption of new varieties, and our socioeconomic research using eye-tracking will be briefly described. Across this multi-disciplinary research effort, big data presents opportunities, challenges, and lessons.

DOI:

Publication date: June 13, 2024

Issue: Open GPB 2024

Type: Article

Authors

Lance Cadle-Davidson1,2*, Matt Clark3, Dario Cantu4,5, Chengyan Yue3,6, Kaitlin Gold2, Yu Jiang2, Qi Sun7, Kate Fessler3

1 USDA-ARS Grape Genetics Research Unit, Geneva, NY, USA
2 School of Integrative Plant Science, Cornell AgriTech, Cornell University, Geneva, NY, USA
3 Department of Horticultural Science, Univ. of Minnesota, Saint Paul, MN, USA
4 Department of Viticulture and Enology, University of California Davis, Davis, CA, USA
5 Genome Center, University of California Davis, Davis, CA, USA
6 Department of Applied Economics, Univ. of Minnesota, Saint Paul, MN, USA
7 BRC Bioinformatics Facility, Institute of Biotechnology, Cornell University, Ithaca, NY, USA

Contact the author*

Keywords

Disease resistance, Grape breeding, Genomics, Computer vision, Consumer behavior

Tags

IVES Conference Series | Open GPB | Open GPB 2024

Citation

Related articles…

The bottleneck/cork interface: A key parameter for wine aging in bottle

The shelf life of wine is a major concern for the wine industry. This is particularly true for wines intended for long cellaring, which are supposed to reach their peak after an ageing period ranging from a few months to several years, or even decades. Low, controlled oxygen inputs through the closure system are generally necessary for the wine to evolve towards its optimum organoleptic characteristics. Our previous studies have already shown that the interface between the cork and the bottleneck plays a crucial role in the transfer of oxygen into the bottled wine.

Correlation between grape and wine quality, landscape diversity, on-field biodiversity, in doc gioia del colle, italy

Analysis of aerial photos by using GIS tools and on-field surveys of flora are used to characterize territories from an agro-ecological point of view and to assess the level of diversity of given agro-ecosystems. More and more correlations between landscape characteristics, sustainability and quality of agriculture production were speculated. In last three years a study was carried out in the area of DOC “Gioia del Colle” in Apulia, South Italy, in order to characterize and investigate different vineyards and sites and find out possible interactions and correlations between the landscape diversity, the biodiversity of fields and the quality of grapes and wines.

Cytochrome P450 CYP71BE5 from grapevine (Vitis vinifera) catalyzes the formation of the spicy aroma compound, (-)-rotundone

(-)-Rotundone, an oxygenated sesquiterpene, is a potent odorant molecule with a characteristic spicy aroma existing in various plants including grapes1. It is considered as a significant compound notably in wines and grapes because of its low sensory threshold (16 ng L-1 in red wine, 8 ng L-1 in water) and aroma properties. (-)-Rotundone was first identified in red wine made from the grape cultivar Syrah (regionally called Shiraz) in Australia1, and then it was found in several grape varieties such as Duras, Grüner Veltliner, Schioppettino and Vespolina from Europe2, 3. Several environmental factors affecting the accumulation of (-)-Rotundone during the grape maturation, were reported such as ambient temperature4, soil properties and topography5, soil moisture from irrigation and light exposure in the bunch zone by leaf removal2.

Mining belowground and aboveground microbiome data to identify microbial biomarkers of grapevine health and yield

Vineyards are home to a wide diversity of microorganisms that interact with plants and with each other.

Non-saccharomyces yeasts in the biocontrol of grape molds in vineyards to reduce the use of pesticides

The wide diffusion of organic cultivation of vineyards and the need to reduce the use of pesticides highlights the urgent need for alternative and sustainable methods of vine protection by pathogen molds.