terclim by ICS banner
IVES 9 IVES Conference Series 9 International Congress on Grapevine and Wine Sciences 9 2ICGWS-2023 9 Identification of loci associated with specialised metabolites in Vitis vinifera

Identification of loci associated with specialised metabolites in Vitis vinifera

Abstract

Secondary (or specialised) metabolites such as terpenes and phenolic compounds are produced by plants for various roles which include defence against pathogens and herbivores, protection against abiotic stress, and plant signalling. Additionally, these metabolites influence grapevine quality traits such as colour, aroma, taste, and nutritional value. However, the biosynthesis of these metabolites is often complex and controlled by multiple genes which in grapevine are predominantly uncharacterised. This study therefore aimed to identify novel loci associated with grapevine volatile organic and phenolic compounds. Chemical analysis of these compound classes was performed via GC-MS and UPLC analysis in a grapevine mapping population, and the quantified metabolites used for quantitative trait loci (QTL) analysis.  Several significant QTLs associated with terpenes and phenolic compounds were identified, and the underlying genomic regions were investigated. For phenolic compounds, a novel locus associated with caftaric acid biosynthesis was identified, and a hydroxycinnamoyltransferase (VvHCT) was investigated as a candidate gene. Several terpene synthases (VvTPSs) co-localised with QTLs associated with monoterpenes and sesquiterpenes. Notably, loci on chromosomes 12 and 13 were shown to be associated with geraniol and cyclic monoterpene accumulation, respectively. The locus on chromosome 12 was shown to contain a geraniol synthase gene (VvGer), while the locus on chromosome 13 contained an a-terpineol synthase gene (VvTer). Further molecular and genomic investigation of VvGer and VvTer found that these genes appear in tandemly duplicated clusters, with high levels of hemizygosity which was further supported by genomic data from recently published diploid grapevine genomes. Interestingly, copy number analysis demonstrated that VvTer gene copy number correlated with both VvTerexpression and the accumulation of cyclic monoterpenes, highlighting the impact of VvTPS gene duplication and copy number variation on terpene accumulation in grapevine.

DOI:

Publication date: October 3, 2023

Issue: ICGWS 2023

Type: Article

Authors

Robin Bosman*1 and Justin Graham Lashbrooke2

1South African Grape and Wine Research Institute, Stellenbosch University, Stellenbosch, South Africa
2 Department of Genetics, Stellenbosch University, South Africa.

Contact the author*

Keywords

terpenes, TPS, grapevine, gene copy number, genomics, QTL, phenolics

Tags

2ICGWS | ICGWS | ICGWS 2023 | IVES Conference Series

Citation

Related articles…

Mycorrhizal symbiosis modulates flavonoid and amino acid profiles in grapes of Tempranillo and Cabernet Sauvignon 

Arbuscular mycorrhizal fungi (AMF) symbiosis is probably the most widespread beneficial interaction between plants and microorganisms. AMF has been widely reported to promote grapevine growth, water and nutrient uptake as well as both biotic and abiotic stress tolerance[1]. However, the impact of AMF on grape composition has been less studied. The aim of this work was to evaluate the effects of the association between two commercial grapevine cultivars (Tempranillo and Cabernet Sauvignon grafted onto 110 rootstock) and AMF on the anthocyanin, flavonol and amino acid concentrations and profiles of grapes.

Conventional and alternative pest management strategies: a comparative proteomic study on musts

In a context of sustainable agriculture, “agroecological immunity” is an emerging concept to reduce the use of chemical pesticides to protect crops against pathogens. This alternative strategy aims to combine different levers including the use of “bio”solutions. These include biocontrol products, some of which being plant defense elicitors, as well as products authorized in organic farming such as copper or sulfur. In vineyards, depending on climate conditions, powdery and downy mildews can be devastating diseases.

Development of a new method for detecting acetic acid bacteria in wine

The presence of acetic acid bacteria in wine can lead to the appearance of acetic acid at concentrations above the perception threshold, causing the wine rejection by the consumer. During the winemaking process, avoiding the presence of acetic acid bacteria is very difficult, as there is always a residual population accompanying the wine[1], and the problem arises with the significant development of these microorganisms that metabolizes large amounts of acetic acid.
The concern of wineries to control the presence of acetic acid bacteria in wines during their conservation is due to the absence of simple and effective analyses that allow the detection of these microorganisms in the initial stages.

Ultra-High Pressure Homogenization (UHPH): a technique that allows the reduction of SO2 in winemaking

Ultra-High Pressure Homogenization (UHPH) is an innovative, efficient and non-thermal technology that can be applied at different stages in winemaking in order to reduce or avoid the use of sulphites. During 2022 vintage, a batch of Xarel·lo must was processed by UHPH at 300 MPa with an inlet temperature (Ti) of 4 ºC. In order to verify the influence of the UHPH treatment in wine characteristics, alcoholic fermentations with this must (UHPH) were carried out and compared with a control batch (without SO2 addition (C)) and a sulphited batch, in which 60 mg/L of total SO2 (SO2) were added.

Metabolomic insights into wine’s sensory identity: unveiling climate-driven changes in aroma composition

Wine, a sensitive and intricate agricultural product, is being affected by climate change, which accelerates grapevine phenological stages and alters grape composition and ripening. This influences the synthesis of key aroma compounds, shaping wine’s sensory attributes [1]. The complex aroma profile, resulting from compound interactions, presents a metabolomics challenge to identify these indicators and their environmental change responses, which is being addressed using diverse analytical techniques.