terclim by ICS banner
IVES 9 IVES Conference Series 9 International Congress on Grapevine and Wine Sciences 9 2ICGWS-2023 9 Identification of a stable epi-allele associated with flower development and low bunch compactness in a somatic variant of Tempranillo Tinto

Identification of a stable epi-allele associated with flower development and low bunch compactness in a somatic variant of Tempranillo Tinto

Abstract

Grapevine cultivars are vegetatively propagated to preserve their varietal characteristics. However, spontaneous somatic variations that occur and are maintained during cycles of vegetative growth offer opportunities for the natural improvement of traditional grape cultivars. One advantageous trait for winegrowing is reduced bunch compactness, which decreases the susceptibility to pests and fungal diseases and favor an even berry ripening. In this study, we examined a loose bunch somatic variant of Tempranillo Tinto cultivar (TT) to elucidate the molecular basis underlying this variation. The variant displayed a masculinized flower phenotype, characterized by an underdeveloped yet functional gynoecium, with reduced development of the style, stigma and septum, as compared to the complete hermaphroditic flowers typically observed in TT. Genetic analysis of its self-progeny demonstrated the co-segregation of the masculinized flower phenotype with the hermaphrodite allele of the grape sex locus (SDR)[1]. While genome re-sequencing did not identify any genetic variation within the SDR locus, an RNA-seq analysis identified one SDR-located gene over-expressed in the somatic variant compared to a control TT clone. The hermaphrodite allele was specifically over-expressed in the variant. Both Illumina WGBS and Nanopore epigenomic analyses identified a hermaphrodite allele-specific hyper-methylated region upstream of the upregulated gene. Analysis of chromatin conformation capture (3C) revealed a three-dimensional rearrangement of the locus, including the presence of a novel 36 kb chromatin loop delimiting the hyper-methylated region, which could be responsible for the over-expression and the phenotype. These findings indicate that somatic epi-alleles in the SDR locus can determine variation in gynoecium development leading to decreased fruit set and looser bunches in grapevine.

Acknowledgements: This study is part of the projects BIO-2017-86375-R and PID2020-120183RB-I00, and PRE-2018-086017 grant funded by MCIN/AEI/10.13039/501100011033 and by “ERDF A way of making Europe”. This study is also part of the vWISE project.

1)  Massonnet, M., Cochetel, N., Minio, A., Vondras, A. M., Lin, J., Muyle, A., Garcia, J. F., Zhou, Y., Delledonne, M., Riaz, S., Figueroa-Balderas, R., Gaut, B. S., & Cantu, D. (2020). The genetic basis of sex determination in grapes. Nature Communications, 11(1), 1–12. DOI: 10.1038/s41467-020-16700-z

DOI:

Publication date: October 4, 2023

Issue: ICGWS 2023

Type: Article

Authors

Alañón, Noelia1*; Ferradás, Yolanda2; Lijavetzky, Diego3; Ferrero, Lucía4; Martínez-Zapater, José Miguel1; Ariel, Federico4; Carbonell-Bejerano, Pablo1; Ibáñez, Javier1

1 Instituto de Ciencias de la Vid y del Vino (ICVV, CSIC-CAR-UR), Departamento de Viticultura, Logroño, Spain
2 Departamento de Biología Funcional, Universidad de Santiago de Compostela, Santiago de Compostela, Spain
3 Instituto de Biología Agrícola de Mendoza (IBAM), CONICET, FCA-UNCuyo, Almirante Brown 500, M5528AHB, Chacras de Coria, Mendoza, Argentina
4 Instituto de Agrobiotecnología del Litoral, CONICET, Universidad Nacional del Litoral, Colectora Ruta Nacional 168km 0, 3000, Santa Fe, Argentina

Contact the author*

Keywords

bunch compactness, somatic variation, flower development, chromatin conformation, epiallele

Tags

2ICGWS | ICGWS | ICGWS 2023 | IVES Conference Series

Citation

Related articles…

Application of an in vitro digestion model to study the bioaccessibility and the effect of the intestinal microbiota on the red wine proanthocyanidins 

Proanthocyanidins are important phenolic fraction for wine quality, contributing to astringency, bitterness and color. Their metabolism begins in the mouth and continues throughout the gastrointestinal tract; however, most of them are accumulated in the colon where are metabolized by the intestinal microbiota, giving rise to a whole series of phenolic acids that may have greater activity at physiological level than the precursors[1]. This study aimed to evaluate in vitro the bioaccessibility of proanthocyanidins in a red wine developed by Bodegas Pradorey, as well as to evaluate the potential effect of intestinal microbiota on polyphenols metabolism identifying and quantifying secondary metabolites.

Antimicrobial activity of oenological polyphenols against Gram positive and Gram negative intestinal multidrug-resistant bacteria

Bacterial antibiotic resistance is a major current health problem. Polyphenols have demonstrated antibacterial activity, and in this work we studied the effect of oenological polyphenols on the growth of intestinal multidrug-resistant strains of human and animal origin. Two Enterococcus faecium strains, resistant to vancomycin and other antibiotics, and four Escherichia coli strains, resistant to ampicillin and other antibiotics, were included in this study. All strains showed multidrug resistant phenotypes and genotypes to at least two antibiotic families.

Crown procyanidin quantification in red wines, rosé wines and Port wines

Condensed grape tannins play a major role in the organoleptic properties and quality of red wine. Recently, a new sub-family of macrocyclic condensed tannins has been identified in red wine and named “crown tannins”. Indeed, the first compound of the family identified and characterised by NMR was the crown procyanidin tetramer which is composed of a macrocyclic structure composed of four (-)-epicatechins link together by B-type interflavanoid linkage in the following an alternative sequences of C4-C8 and C4-C6 linkage. The 3D structure of this unusual crown procyanidin family reveals a central cavity in the molecule [1].

Late winter pruning induces a maturity delay under temperature-increased conditions in cv. Merlot from Chile

Chile is considered vulnerable to climate change; and these phenomena affect several mechanisms in the grape physiology and quality. The global temperature increase affects sugar contents, organic acids, and phenolic compounds in grapes, producing an imbalance maturity. In this sense, an alternative to reduce the impact is to perform pruning after vine budburst, known as “Late Pruning” (LP).

Foliar application of urea improved the nitrogen composition of Chenin grapes

The nitrogen composition of the grapes directly affects the developments of alcoholic fermentation and influences the final aromatic composition of the wines. The aim of this study was to determine the effect and efficiency of foliar applications of urea on the nitrogen composition of grapes. This study was carried out during 2023 vintage and in the Chenin vineyard located in Estacion Experimental Mendoza (Argentina). Three urea concentrations 3, 6 and 9 Kg N/ha (C1, C2, and C3, respectively) and control (T) were applied in this vineyard at veraison. In all solutions were added 1ml/l of Tween 80 ® surfactant.