OENO IVAS 2019 banner
IVES 9 IVES Conference Series 9 OENO IVAS 9 OENO IVAS 2019 9 Chemical and Biochemical reactions, including grape and wines microorganisms impact 9 Multi-omics methods to unravel microbial diversity in fermentation of Riesling wines

Multi-omics methods to unravel microbial diversity in fermentation of Riesling wines

Abstract

Wine aroma is shaped by the wine’s chemical compositions, in which both grape constituents and microbes play crucial roles. Although wine quality is influenced by the microbial communities, less is known about their population interactions. Previous studies linking the effect of native microbial communities to sensory relevant aroma compounds with their interactive properties have been vastly unsuccessful to date. Partially because studies relied on relatively few isolated strains or chemical compounds, which may be not sufficient to fully understand this complex picture.

Native microbial communities from different Riesling vineyards were studied over multiple experiments during vinification as well as over a two-year to reveal their effects on chemical and sensory composition of spontaneously fermented Riesling wines.

We demonstrate that by combining modern untargeted high-throughput omics technologies and statistical approaches, it is possible to look into samples in situ in the actual natural environment. Our results indicate that both vineyard and winery microbial communities are found to play significant roles in wine. Microbial communities within the fermenting were strongly influenced by vineyard of origin.

These population dynamics are consequently translated into diverse sensory properties through sensory relevant chemical interactions. We found that both sensory and chemical compositions were heavily influenced by the microbial community composition during the vinification as well as the vineyard and the year. Such methodologies allow to find novel microbial and chemical patterns which could be further tested with targeted studies. In addition to deconstructing the microbial community composition in complex natural environment, we leverage on shotgun metagenomic data to undertake the functional analysis of the microbial community during wine fermentation. In the future, multiomics approaches will be essential for fully discovering the complexity of biological networks, where microbes, host and chemical compounds interact with human sensory perceptions. These developed approaches benefit any industry that works with complex biological interactions.

DOI:

Publication date: June 19, 2020

Issue: OENO IVAS 2019

Type: Article

Authors

Kimmo SIREN Sarah Siu Tze Mak, M. Thomas P. Gilbert, Ulrich Fischer

Section for Evolutionary Genomics, Natural History Museum of Denmark, University of Copenhagen, Co-penhagen, Denmark
Institute for Viticulture & Oenology, DLR Rheinpfalz, Neustadt/Wstr.,Germany

Contact the author

Keywords

Metagenomics, Metabarcoding, Chemical interactions, Machine learning 

Tags

IVES Conference Series | OENO IVAS 2019

Citation

Related articles…

Effect of interspecific yeast hybrids for secondary in-bottle alcoholic fermentation of english sparkling wines

In sparkling winemaking several yeasts can be used to perform the primary alcoholic fermentation that leads to the elaboration of the base wine. However, only a few Saccharomyces cerevisiae yeast strains are regularly used for the secondary in-bottle alcoholic fermentation 1. Recently, advances in yeast development programs have resulted in new breeds of interspecific wine yeast hybrids that ferment efficiently while producing novel flavours and aromas 2. In this work, sparkling wines produced using interspecific yeast hybrids for the secondary in-bottle alcoholic fermentation have been chemically and sensorially characterized.METHODS: Three commercial English base wines have been prepared for secondary in-bottle alcoholic fermentation with different yeast strains, including two commercial and several novel interspecific hybrids derived from Saccharomyces species not traditionally used in sparkling winemaking. After 12 months of lees ageing, the 14 wines produced were analysed for their chemical and macromolecular composition 3,4, phenolic profile 5, foaming and viscosity properties [6]. The analytical data were supplemented with a sensory analysis.

Prediction of astringency in red wine using tribology approach to study in-mouth perception

AIM Astringency is described as a ‘dry puckering‐like sensation’ following consumption of tannins1 that affect consumer preference of foods and beverages, including red wine2. To improve the understanding of astringency, which is a complex interaction due to multiple mechanisms occurring simultaneously, further studies are needed. In this view, oral tribology is considered a useful technique for beverage study to evaluate the thin-film lubrication properties of saliva resulting in oral friction‐related sensations3. The aim of this study was to examine the film behavior of selected protein-based fluids under controlled friction conditions, to understand polyphenol-protein interactions involved in the sensation of astringency.

Photoselective shade films affect grapevine berry secondary metabolism and wine composition

Grapevine physiology and production are challenged by forecasted increases in temperature and water deficits. Within this scenario, photoselective overhead shade films are promising tools in warm viticulture areas to overcome climate change related factors. The aim of this study was to evaluate the vulnerability of ‘Cabernet Sauvignon’ grape berry to solar radiation overexposure and optimize shade film use for berry integrity. A randomized complete block design field study was conducted across two years (2020-2021) in Oakville, Napa Valley, CA, with four shade films (D1, D3, D4, D5) differing in the percent of radiation spectra transmitted and compared to an uncovered control (C0). Integrals for gas exchange parameters and mid-day stem water potential were unaffected by the shade films in 2020 and 2021. By harvest, berries from uncovered and shaded vines did not differ in their size or primary metabolism in either year. Despite precipitation exclusion during the dormant season in the shaded treatments, yield did not differ between them and the control in either season. In 2020, total skin anthocyanins (mg/g fresh mass) in the shaded treatments was greater than C0 during berry ripening and at harvest. Conversely, flavonol concentrations in 2020 were reduced in shaded vines compared to C0. The 2020 growing season highlighted the impact of heat degradation on flavonoids. Flavonoid concentrations in 2021 increased until harvest while flavonoid degradation was apparent from veraison to harvest in 2020 across shaded and control vines. Wine analyses highlighted the importance of light spectra to modify wine composition. Wine color intensity, tonality and anthocyanin values were enhanced in D4 whereas antioxidant properties were enhanced in C0 and D5 wines. Altogether, our results highlighted the need of new approaches in warm viticulture areas given the impact that composition of light has on berry and wine quality.

Infrared spectroscopy investigation of fresh grapevine organs for clustering and classification.

The spectral information acquired from fresh whole grapevine organs have yet to be fully explored. Infrared spectroscopy provides the means to rapidly measure fresh plant material and providing extensive information on the physical and chemical structure of samples.

Exploring the influence of terroir on the sensorial and aroma profiles of wines – An application to red wines from AOC Corbières

The aromatic profile of a wine is the result of volatile molecules present in grapes (varietal or primary aromas) and those produced during the winemaking process of fermentation (secondary aromas) and during wine aging (tertiary aromas).