terclim by ICS banner
IVES 9 IVES Conference Series 9 Developmental and genetic mechanisms underlying seedlessness in grapevine somatic variants

Developmental and genetic mechanisms underlying seedlessness in grapevine somatic variants

Abstract

Seedless table grapes are greatly appreciated for fresh and dry consumption. There is also some interest in seedless winegrapes, because the combination of lower fruit set, smaller berries with higher skin/pulp ratio and looser bunches with the absence of seeds in crushed berries, a possible source of astringent tannins, might also have favorable effects on wine quality. The gene VviAGL11 has been shown to play a central role in stenospermocarpy in Sultanina, but the molecular bases of other sources of stenospermocarpy as well as of parthenocarpy have not been clarified yet. To help fill this gap, a genetic and phenotypic characterization of seedless somatic variants from other cultivars has been undertaken, with special emphasis on a parthenocarpic Sangiovese mutant known as Corinto Nero.
In vitro pollen germination tests, in vivo pollination trials, histological observation of female gametophyte development, and genetic analysis of seedlings have shown that Corinto Nero is incapable of forming seeds probably due to meiotic anomalies.
In addition to a pairwise transcriptomic comparison between the mutant and the seeded wild-type, we present here a comparative genomic analysis between Corinto Nero and 10 seeded clones of Sangiovese based on short-read resequencing to identify sequence and structural variation that may reveal candidate genes for parthenocarpy in Corinto Nero.

DOI:

Publication date: June 13, 2024

Issue: Open GPB 2024

Type: Article

Authors

Laura Costantini1*§, Paula Moreno-Sanz, Anna Nebish3,4, Silvia Lorenzi1, Elvira d’Amato5, Mara Miculan6,8, Gabriele Magris6,7, Gabriele Di Gaspero6, Ivana Gribaudo9, Anna Schneider9, Maria Stella Grando2

1 Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige (Trento), Italy
2 Center Agriculture Food Environment (C3A), University of Trento, San Michele all’Adige (Trento), Italy
3 Departamento de Viticultura, Instituto de Ciencias de la Vid y del Vino (CSIC, UR, Gobierno de la Rioja), Logroño, Spain
4 Department of Genetics and Cytology, Yerevan State University, Yerevan, Armenia
5 Department of Physics, University of Trento, Povo (Trento), Italy
6 Istituto di Genomica Applicata, Udine, Italy
7 Department of Agricultural, Food, Environmental and Animal Sciences, University of Udine (Udine), Italy
8 Center of Desert Agriculture, King Abdullah University of Science and Technology (KAUST), Thuwal, Makkah, Saudi Arabia
9 Institute for Sustainable Plant Protection – Research Council of Italy, Grugliasco (Torino), Italy

§ Equally contributed

Contact the author*

Keywords

somatic variation, clones, seedlessness, reproductive development, genomic structural variation

Tags

IVES Conference Series | Open GPB | Open GPB 2024

Citation

Related articles…

Genomic characterization of terpene biosynthetic genes in seven Vitis vinifera L. varieties 

Grapes (Vitis vinifera L.) are a fruit crop of high economic significance globally. Each grapevine cultivar is characterized by its distinctive grape aroma, affecting the wine quality. In several cultivars, the aroma is shaped by terpenoid (mono- and sesqui-terpenoids). Their profile is controlled by terpene synthases (TPS), which are part of a largely expanded gene family. How the variation in TPS copy number and sequence among cultivars determines terpenoid profiles of grapes remains largely unexplored. We annotated TPS in the haplotypes of seven genomes (Riesling, Albariño, Fiano, Gewürztraminer, Pinot Noir, Cabernet Sauvignon, and Viognier) using BLAST, GMAP, PFAM, and phylogenetic analyses. Further, TPS expression patterns and terpenoid accumulation during berry development and ripening were characterized using RNA-Seq and SPME/GC-MS platforms, respectively. Variation in TPS copy number exists among cultivars. Specifically, the TPS counts span a range of 251 to 150 for Riesling and Fiano, respectively, when considering combined haplotypes within each cultivar. Total terpenoid accumulation patterns throughout development were consistent among the five aromatic cultivars, marked by high concentrations in flowers, followed by a decline and subsequent rise during berry development and ripening, respectively. Conversely, non-aromatic cultivars exhibited no substantial increase in terpenoid concentration during ripening. Transcriptome and network analyses are currently employed to determine which TPS are expressed in the berry and determine the terpenoid profile of the specific cultivar. These findings shed light on the genomic determinants of grape aroma in major cultivars, and allow future studies focused on cultivar-specific responses of terpenoid biosynthesis to environmental stresses.

Mobile device to induce heat-stress on grapevine berries

Studying heat stress response of grapevine berries in the field often relies on weather conditions during the growing season. We constructed a mobile heating device, able to induce controlled heat stress on grapes in vineyards. The heater consisted of six 150 W infrared lamps mounted in a profile frame. Heating power of the lamps could be controlled individually by a control unit consisting of a single board computer and six temperature sensors to reach a pre-set temperature. The heat energy applied to individual berries within a cluster decreases by the squared distance to the heat source, enabling the establishment of temperature profiles within individual clusters. These profiles can be measured by infrared thermography once a steady state has been reached. Radiant flux density received by a berry depending on the distance was calculated based on a view factor and measured lamp surface temperature and resulted to 665 Wm-2 at 7cm. Infrared thermography of the fruit surface was in good agreement with measurements conducted with a thermocouple inserted at epidermis level. In combination with infrared thermography, the presented device offers possibilities for a wide range of applications like phenotyping for heat tolerance in the field to proceed in the understanding of the complex response of plants to heat stress. Sunburn necrosis symptoms were artificially induced with the aid of the device for cv. Bacchus and cv. Sylvaner in the 2020 and 2021 growing season. Threshold temperatures for sunburn induction (LT5030min) were derived from temperature data of single berries and visual sunburn assessment, applying logistic regression. A comparison of threshold temperatures for the occurrence of sunburn necrosis confirmed the higher susceptibility of cv. Bacchus. The lower susceptibility of cv. Sylvaner did not seem to be related to its phenolic composition, rendering a thermoprotective role of berry phenolic compounds unlikely.

Firmness of the grapes. Mechanical tests and definition of indices. Study of the evolution of berry skin resistance during alcoholic fermentation

The mechanical strength or firmness of a fruit is considered an important parameter to characterize its state of maturity or conservation, as other parameters such as sugar level or color.

Symbiotic microorganisms application in vineyards: impacts on grapevine performance and microbiome

Microorganism-based inoculants have been suggested as a viable solution to mitigate the adverse effects of climate change on viticulture. However, the actual effectiveness of these inoculants when applied under field conditions remains a challenge, and their effects on the existing soil microbiota are still uncertain. This study investigates the impact of arbuscular mycorrhizal fungi inoculation on grapevine performance and microbiome. The study was conducted in a vineyard of Callet cultivar in Binissalem, Mallorca, Spain. Two different treatments were applied: control and inoculation with commercial mycorrhizae complex of Rhizoglomus irregulare applied to plants through irrigation.

Studying heat waves effects on berry composition: first outlooks and challenges

Extreme climatic events, such as prolonged drought followed by intense flooding, increasingly impact viticulture, affecting vine physiology, productivity, and grape composition.