terclim by ICS banner
IVES 9 IVES Conference Series 9 Genome wide association mapping of phenology related traits in Vitis vinifera L

Genome wide association mapping of phenology related traits in Vitis vinifera L

Abstract

Climate change, with rise in temperatures, is leading to an advance in the dates of phenological stages, with a loss in quality of the grape final product. Therefore, the understanding of the genetic determinants driving the phenological stages of flowering, veraison and the interval between them, represents a target for the development of grapevine’s cultivar adapted to the changing environment.
Here we conducted a GWA study to identify SNPs significantly associated to flowering time, veraison time and to the interval among them. A germplasm collection (CREA-VE in Susegana, Treviso, Italy) including 649 grapevine’s cultivar representing 365 unique genotypes was considered. Cultivars were phenotyped for flowering time and veraison time along 11 years. Flowering-veraison intervals were also derived and distribution for all traits was inspected and eventually corrected. For this analysis we have built a genetic dataset including 6679 SNPs. SNPs were either recovered from litterature or integrated by genotyping through grapevine Illumina SNPChip 18K and used for evaluating the genetic structure. MLM analysis conducted independently for the three different phenological traits identified a list of few significantly associated SNPs. Among the three traits flowering time yielded the highest number of associated SNPs. For each trait SNPs consistently associated across more years were found. Moreover partially overlapping SNPs associated both to veraison time and flowering-veraison time interval were found. Interestingly most of the associated SNPs co-localized with QTL regions already known either for flowering or veraison traits in grapevine. Putative candidate genes underlying such regions are discussed.

DOI:

Publication date: June 13, 2024

Issue: Open GPB 2024

Type: Poster

Authors

Giada Bolognesi1, Pietro Delfino1, Chiara Broccanello1, Riccardo Mora1, Martina Marini1, 2, Massimo Gardiman2, Mirella Giust2, Diego Tomasi2, Manna Crespan2, Diana Bellin1*

1Department of Biotechnology, University of Verona, Verona, Italy
2 CREA Research Centre for Viticulture and Enology, Conegliano (TV), Italy

Contact the author*

Keywords

Climate change, GWAS, phenology, candidate genes

Tags

IVES Conference Series | Open GPB | Open GPB 2024

Citation

Related articles…

Wine racking in the winery and the use of inerting gases

The O2 uptake in the different winemaking processes is generally considered to be negative for the sensory characteristics of white and rosé wines. Wine racking is a critical point of O2 uptake, as the large surface area of the wine exposed during this operation and the inability to maintain an effective inert gas blanket over it.
The objective was to study O2 uptake during the racking of a model wine without using inert gases and to compare it with the purging of the destination tank with different inert gases.

Cartes thématiques: applications au vignoble champenois

Quel est l’intérêt des cartes en viticulture? Celles-ci répondent à plusieurs usages.
Formalisation au sein d’un référentiel codifié et normalisé de la connaissance relative au milieu, aux observations biologiques et aux pratiques culturales.

About long time and vine quality modelisation e pistemological appro ach to geographical viticulture

This work began as an intellectual game, in order to discuss the notion of wine quality in terms of terroir and territory spatial structure. Vine and wine quality has long been questioned by scientists. Each discipline approaching it with his own tools.

Trials with machine harvested sauvignon blanc: the importance of grape transport time and temperature

It is well known that free varietal thiols, in particular 3-mercaptohexanol (3MH) and 3-mercaptohexyl ace-tate (3MHA), are important constituents to the aroma of New Zealand Sauvignon blanc wines.

Effect of interspecific yeast hybrids for secondary in-bottle alcoholic fermentation of english sparkling wines

In sparkling winemaking several yeasts can be used to perform the primary alcoholic fermentation that leads to the elaboration of the base wine. However, only a few Saccharomyces cerevisiae yeast strains are regularly used for the secondary in-bottle alcoholic fermentation 1. Recently, advances in yeast development programs have resulted in new breeds of interspecific wine yeast hybrids that ferment efficiently while producing novel flavours and aromas 2. In this work, sparkling wines produced using interspecific yeast hybrids for the secondary in-bottle alcoholic fermentation have been chemically and sensorially characterized.METHODS: Three commercial English base wines have been prepared for secondary in-bottle alcoholic fermentation with different yeast strains, including two commercial and several novel interspecific hybrids derived from Saccharomyces species not traditionally used in sparkling winemaking. After 12 months of lees ageing, the 14 wines produced were analysed for their chemical and macromolecular composition 3,4, phenolic profile 5, foaming and viscosity properties [6]. The analytical data were supplemented with a sensory analysis.