terclim by ICS banner
IVES 9 IVES Conference Series 9 Genome wide association mapping of phenology related traits in Vitis vinifera L

Genome wide association mapping of phenology related traits in Vitis vinifera L

Abstract

Climate change, with rise in temperatures, is leading to an advance in the dates of phenological stages, with a loss in quality of the grape final product. Therefore, the understanding of the genetic determinants driving the phenological stages of flowering, veraison and the interval between them, represents a target for the development of grapevine’s cultivar adapted to the changing environment.
Here we conducted a GWA study to identify SNPs significantly associated to flowering time, veraison time and to the interval among them. A germplasm collection (CREA-VE in Susegana, Treviso, Italy) including 649 grapevine’s cultivar representing 365 unique genotypes was considered. Cultivars were phenotyped for flowering time and veraison time along 11 years. Flowering-veraison intervals were also derived and distribution for all traits was inspected and eventually corrected. For this analysis we have built a genetic dataset including 6679 SNPs. SNPs were either recovered from litterature or integrated by genotyping through grapevine Illumina SNPChip 18K and used for evaluating the genetic structure. MLM analysis conducted independently for the three different phenological traits identified a list of few significantly associated SNPs. Among the three traits flowering time yielded the highest number of associated SNPs. For each trait SNPs consistently associated across more years were found. Moreover partially overlapping SNPs associated both to veraison time and flowering-veraison time interval were found. Interestingly most of the associated SNPs co-localized with QTL regions already known either for flowering or veraison traits in grapevine. Putative candidate genes underlying such regions are discussed.

DOI:

Publication date: June 13, 2024

Issue: Open GPB 2024

Type: Poster

Authors

Giada Bolognesi1, Pietro Delfino1, Chiara Broccanello1, Riccardo Mora1, Martina Marini1, 2, Massimo Gardiman2, Mirella Giust2, Diego Tomasi2, Manna Crespan2, Diana Bellin1*

1Department of Biotechnology, University of Verona, Verona, Italy
2 CREA Research Centre for Viticulture and Enology, Conegliano (TV), Italy

Contact the author*

Keywords

Climate change, GWAS, phenology, candidate genes

Tags

IVES Conference Series | Open GPB | Open GPB 2024

Citation

Related articles…

Interest and impact of PVP/PVI (Polyvinylpyrrolidone/ Polyvinylimidazole) on winemaking and final quality of wines

Céline Sparrow a, Christophe Morge a, a SOFRALAB SAS, 79, av. A.A. Thévenet – CS 11031 – 51530 Magenta, France Consumers’ health and security force authorities to limit, in wine as in others food industry products, the concentration in « dangerous » molecules. Therefore the legal limit in heavy metals keeps on decreasing. As per proof EU regulation just decrease the stain concentration in wine from 0,2 to 0,15 mg/l. Certain changes , such as sodium arsenite treatment in vines, disappearance of brass in wineries to the benefit of stainless steel, limit even more the concentration of heavy metals in wines. But the use of copper derivates in vines treatments is difficult to replace. In the case of wine and its elaboration, the problem is even more complex. Indeed, regulation forces the wine producers to control the concentration of certain heavy metals in final wines.

Key genes in rotundone biosynthesis are affected by temperature, light, water supply, and nitrogen uptake

Rotundone accumulation and biosynthesis is a complicated process. Previous research highlighted that these phenomenons were affected under ecophysiological conditions by viticultural practices (e.g. defoliation or irrigation). Individually, these practices often impact several abiotic factors that are difficult to separate such as temperature, water or nitrogen status, or radiation. Such dissociation can be achieved under controlled environmental conditions using potted vines.

Legal protection of the vitivinicultural terroirs in Yamanashi Prefecture, Japan

This study analyses the actual situation regarding the legal protection of the vitivinicultural terroirs in Yamanashi Prefecture, the centre of Japanese wine industry with more than 150 years of wine-making tradition.

Wine industry, digital transformation, and sustainability: a systematic literature 

This paper aims to (i) identify the state of the art regarding digital transformation in the transition to sustainability in the wine industry, (ii) analyze the adoption of digital technologies at different stages of the winemaking process and their contribution to the triple bottom line of sustainability, and (iii) present a research agenda that facilitates the development of the field, providing contributions to both literature and managerial practice.

Wine tannins: What place for grape seed?

Phenolic compounds are among the most important quality factors of wines. They contribute to the organoleptic characteristics of wine such as colour, astringency, and bitterness. Although tannins found in wine can come from microbial and oak sources, the main sources of polyphenols are skin and seed from grapes. Yet, the link between grape seed phenolic content and wine composition, or even the link between seed maturity stage and wine composition are poorly studied. This work describes and explains the seed tannins kinetics release in wine, but also the impact of seed maturity stage on seed tannins extractability.