Merging two genomes: a holistic approach to disentangle rootstock-mediated drought and recovery responses

During Champagne or sparkling wine tasting, gas-phase CO2 and volatile organic compounds invade the headspace above glasses [1], thus progressively modifying the chemical space perceived by the consumer. Gas-phase CO2 in excess can even cause a very unpleasant tingling sensation perturbing both ortho- and retronasal olfactory perception [2]. Monitoring as accurately as possible the level of gas-phase CO2 above glasses is therefore a challenge of importance aimed at better understanding the close relationship between the release of CO2 and a collection of various tasting parameters.

As Vitis vinifera varieties are susceptible to fungal diseases, numerous chemical treatments are generally required to ensure the quantity and quality of the harvest. However, in the context of sustainable viticulture, there are increasing societal request, political incitation, and winegrowers’ awareness to reduce the use of pesticides.

Bioprotection, leveraging beneficial microorganisms, has emerged as a sustainable approach to modern winemaking, minimizing reliance on chemical preservatives like as sulfur dioxide (SO₂).

Grapevine powdery mildew resistance is a key target for grape breeders and grape growers worldwide. The driver of the USDA-NIFA-SCRI VitisGen3 project is completing the pipeline from germplasm identification to QTL to candidate gene characterization to new cultivars to vineyards to consumers. This is a common thread across such projects internationally. We will discuss how our objectives and approaches leverage big data to advance this initiative, starting with genomics and computer vision phenotyping for gene discovery and genetic improvement. To manage and maintain resistances for long-term sustainability, growers will be trained through our nation-wide extension and outreach plan.

The use of next-generation sequencing (NGS) has helped understand microbial genetics in oenology. Current studies mainly focus on barcoded amplicon NGS but not shotgun sequencing, which is useful for functional analyses. Since the high percentage of grapevine DNA conceals the microbial DNA in must, the majority of sequencing data is wasted in bioinformatic analyses. Here we present capture depletion of grapevine whole genome DNA.