Mining microbiome data to identify antagonists of grapevine downy mildew (Plasmopara viticola)

Wines differ from each other based on seven different factors: the type of grape; the bedrock geology and resulting soils; the climate; the soil hydrology; physiography of the site; the winemaker and the vineyard management techniques. The first five of these factors make up what the French call terroir, “the taste of the place”.

The objective of this investigation was to verify usefulness of proximal sensing technology and unmanned aerial vehicles (UAVs) for mapping variables e.g., vine size (potential vigor), soil and vine water status, yield, fruit composition, and virus incidence in vineyards.

Breeding programs have been launched in the leading wine-growing countries and have been successful since there are multiple new disease-resistant cultivars on the market available to the vine growers.

‘Vignoles’ is an aromatic, white-fruited wine grape variety valued by growers and wineries in the Eastern United States. Vignoles is grown in diverse locations in New York, Missouri, Indiana, Ohio, Pennsylvania, Illinois, Nebraska and Michigan. Consumers recognize and value the variety for its special wine quality.

Soils in vineyards are recognized as complex agrosystems whose characteristics reflect complex interactions between natural factors (lithology, climate, slope, biodiversity) and human activities. To date, most of the unknown lies in an incomplete understanding of soil ecosystems, and specifically in the microbial biodiversity even though soil microbiota is involved in many key functions, such as nutrient cycling and carbon sequestration. Soil biological properties are indicative of soil quality. Therefore, understanding how soil communities are related to soil ecosystem functioning is becoming an essential issue for soil strategy conservation. Here, we propose to assess the importance of land-cover history on the present-day microbiological and physico-chemical properties. The studied area was selected in the Burgundian vineyards (Pernand-Vergelesses, Burgundy, France) where land occupation has been reconstructed over the last 40 years. Soil samples were collected in five areas reflecting various land cover history (forest, vineyards, shifting from forest to vineyards). For each area, physico-chemical parameters (pH, C, N, P, grain size) were measured and DNA was extracted to characterize the abundance and diversity of microbial communities. The obtained results show significant differences in the five areas suggesting that present-day microbial molecular biomass and bacterial taxonomic is partly inherited from past land occupation. Over longer period of time, such study of land-uses legacies may help to better assess ecosystem recovery and the impact of management practices for a better soil quality and vineyards sustainability.