terclim by ICS banner
IVES 9 IVES Conference Series 9 Unveiling the Grapevine Red Blotch Virus (GRBV) host-pathogen arms-race via multi-omics for enhanced viral defense 

Unveiling the Grapevine Red Blotch Virus (GRBV) host-pathogen arms-race via multi-omics for enhanced viral defense 

Abstract

The Grapevine Red Blotch Virus (GRBV) poses a critical challenge to the wine sector, lacking a uniquely identified vector. Current control methods involve costly and labor-intensive vine removal, emphasizing the urgency for targeted alternatives. The limited understanding of intricate host-virus interactions underscores the need for foundational knowledge to develop innovative disease control strategies. These include efforts to boost the plant’s RNA interference (RNAi) response, including RNA-based topical applications. Our research investigates the early GRBV infection stages, aiming to unravel the “arms race” between the plant’s RNAi machinery and the viral counter-defense strategies. Following an Agrobacterium tumefaciens-mediated infiltration with an infectious clone containing the GRBV genome, we detected a peak of viral activity in infected microvine plants one-week post-infection. Small RNA sequencing from infected tissues identified 21, 22, and 24 nucleotides virus-derived small-interfering RNAs (vsiRNAs), suggesting post-transcriptional and transcriptional gene silencing activity. We utilized a custom bioinformatics pipeline to identify GRBV “hotspots,” that were further validated as RNAi precursors through secondary structure predictions. GRBV-targeted bisulfite sequencing revealed hypermethylation within GRBV hotspots, establishing a crucial link between small RNA production and effective methylation of the virus, culminating at 24 days post-infection (dpi).

Examining the plant transcriptome and methylome during early infection dates (3, 6, 12 and 24 dpi) unveiled molecular strategies employed by both organisms to counteract each other. The multilayered OMICs data we generated constitute the foundation for innovative viral defense strategies.  This strategy could enhance GRBV management, ensuring sustainable vineyard practices by integrating molecular biology insights into agriculture.

Download the abstract

DOI:

Publication date: June 14, 2024

Issue: Open GPB 2024

Type: Article

Authors

Christian Mandelli1*, Laurent G. Deluc1,2

1 Department of Horticulture, Oregon State University, Corvallis, OR, United States
2 Oregon Wine Research Institute, Oregon State University, Corvallis, OR, United States

Contact the author*

Keywords

Grapevine Red Blotch Virus (GRBV), Host-virus interactions, small RNA-seq, genome-wide OMICs

Tags

IVES Conference Series | Open GPB | Open GPB 2024

Citation

Related articles…

A look back at 20 years of exploring the future of the vines and wines sector

What if, in 25 years, most wines were dealcoholized and flavored ? What if vines were only cultivated to combat erosion, store carbon, and provide anthocyanins…? What if climate change completely changed the list of vine varieties cultivable for wine production in France? What if food stores had completely disappeared in favor of virtual platforms? And if… because the long-term future is not predetermined and therefore not knowable, because the future is open to several possibilities, because the future does not emerge from nothing but from the present which conceals heavy trends and weak signals, prospective approaches make it possible to consider the room for maneuver that actors have to promote the advent of a future, which we can hope to be chosen, at least in part.

Read More

Stabulation (lees stirring) in must as a method for aroma intensification: A comparison with skin contact and a classical version of Traminer and Sauvignon blanc in Austria

In the course of this study, stabilisation (lees stirring in unclarified must) with skin contact and classic white wine vinification were compared for the Sauvignon blanc and Traminer varieties in Austria. The test wines were analysed for the volatile substances esters, free monoterpenes and fruity thiols

Read More

THE INFLUENCE OF COMMERCIAL SACCHAROMYCES CEREVISIAE ON THE POLY-SACCHARIDES AND OTHER CHEMICAL PROFILES OF NEW ZEALAND PINOT NOIR WINES

Wine polysaccharides (PS) play an important role in balancing mouthfeel and stability of wine and even influence aroma volatility. Despite this, there is limited research into the effect of winemaking additives on the polysaccharide profile and other macromolecules of New Zealand (NZ) Pinot noir wine. In this study the influence of a selection of commercial S. cerevisiae strains on the chemical profile, including polysaccharides, of New Zealand Pinot noir (PN) wine was investigated. Research scale PN fermentations using five strains of commercially available S. cerevisiae (Lalvin EC1118 and RC212, Levuline BRG YSEO, Viallate Ferm R71 and R82) were undertaken. PS were qualified and quantified using HPLC-RID.

Read More

Recovery and purification of proteins from grape seed byproducts using proteomic and separative techniques

Grape seeds account for around 5% of the weight of the whole grape berry, representing approximately 40%-50% of the solid by-products that the different wine industries generate during the winemaking process.

Read More

Effets des pratiques agro-viticoles sur l’activité biologique et la matière organique des sols : exemples en Champagne et en Bourgogne

The notion of terroir covers multiple components, from geology, pedology, geomorphology and climatology (Doledec, 1995), to aspects that are less well identified but which also intervene in the “typicality” of wines. This justifies the “zoning” approach (Moncomble and Panigaï, 1990) to define homogeneous areas, under the same agro-viticultural management and also identified at the product level (Morlat and Asselin, 1992).

Read More