terclim by ICS banner
IVES 9 IVES Conference Series 9 Unveiling the Grapevine Red Blotch Virus (GRBV) host-pathogen arms-race via multi-omics for enhanced viral defense 

Unveiling the Grapevine Red Blotch Virus (GRBV) host-pathogen arms-race via multi-omics for enhanced viral defense 

Abstract

The Grapevine Red Blotch Virus (GRBV) poses a critical challenge to the wine sector, lacking a uniquely identified vector. Current control methods involve costly and labor-intensive vine removal, emphasizing the urgency for targeted alternatives. The limited understanding of intricate host-virus interactions underscores the need for foundational knowledge to develop innovative disease control strategies. These include efforts to boost the plant’s RNA interference (RNAi) response, including RNA-based topical applications. Our research investigates the early GRBV infection stages, aiming to unravel the “arms race” between the plant’s RNAi machinery and the viral counter-defense strategies. Following an Agrobacterium tumefaciens-mediated infiltration with an infectious clone containing the GRBV genome, we detected a peak of viral activity in infected microvine plants one-week post-infection. Small RNA sequencing from infected tissues identified 21, 22, and 24 nucleotides virus-derived small-interfering RNAs (vsiRNAs), suggesting post-transcriptional and transcriptional gene silencing activity. We utilized a custom bioinformatics pipeline to identify GRBV “hotspots,” that were further validated as RNAi precursors through secondary structure predictions. GRBV-targeted bisulfite sequencing revealed hypermethylation within GRBV hotspots, establishing a crucial link between small RNA production and effective methylation of the virus, culminating at 24 days post-infection (dpi).

Examining the plant transcriptome and methylome during early infection dates (3, 6, 12 and 24 dpi) unveiled molecular strategies employed by both organisms to counteract each other. The multilayered OMICs data we generated constitute the foundation for innovative viral defense strategies.  This strategy could enhance GRBV management, ensuring sustainable vineyard practices by integrating molecular biology insights into agriculture.

DOI:

Publication date: June 14, 2024

Issue: Open GPB 2024

Type: Article

Authors

Christian Mandelli1*, Laurent G. Deluc1,2

1 Department of Horticulture, Oregon State University, Corvallis, OR, United States
2 Oregon Wine Research Institute, Oregon State University, Corvallis, OR, United States

Contact the author*

Keywords

Grapevine Red Blotch Virus (GRBV), Host-virus interactions, small RNA-seq, genome-wide OMICs

Tags

IVES Conference Series | Open GPB | Open GPB 2024

Citation

Related articles…

Towards a better understanding of the root system diversity and plasticityin young grafted vines using 2D imaging and 3D modelling tools

Three-dimensional functional-structural root architecture models, which decompose the root system architecture (RSA) into elementary developmental processes such as root emission, axial growth, branching patterns and tropism have become useful tools for (i) reconstructing in silico the spatial and temporal dynamics of root systems in a soil volume, (ii) analyzing their genotypic diversity and plasticity to the environment, and (iii) overcoming the bottleneck associated with their visualization and measurement in situ. Here, we present an original work on RSA phenotyping and modelling in grapevine. First, we developed 2D image-based analysis pipelines to quantify morphological and architectural traits in young grafts. Second, we parametrized and validated the 3D root model Archisimple on two rootstock genotypes (RGM, 1103P) grafted with V. vinifera Cabernet-Sauvignon and grown in different controlled conditions (rhizotrons, pots, tubes).

Are my bubbles shrinking? A deeper look at oxygen desorption in wine

In the past decade, there has been an increasing amount of work dedicated to understanding micro-oxygenation in wine.

Wine ageing: Managing wood contact time.

Barrel ageing is a transformative process that alters a wine’s organoleptic properties and consequently its price. Even though it is considered beneficial mostly for red wines, ageing can also be used for white wines but for shorter time periods. Due to barrel costs, space requirements and the markets’ demands for fast release of each new vintage, new products such as oak chips or shavings have been developed to help minimize the time needed for the extraction of essential wood compounds.

Behaviour of two training systems for mechanical pruning combined with different nitrogen fertilizations on cv. Colombard

Today winegrowers involved in mechanical winter pruning are applying this viticultural technique on two main training systems, the free cordon, appearing to be the more efficient, and the trellised vertical shoot positioning (VSP) system. The main reasons for maintaining the trellis are generally due to common habits in vineyard management, risk of wind damage for the shoots, or risk of decrease in photosynthesis potential. The aim of the study was to assess the effects of the two training systems on vine. In addition, different nitrogen fertilization levels were applied on the two systems to evaluate the best combination to achieve yield and grape quality.

Relationship between soil and grapevine variety in the wineyard of Jura: example for the “Trousseau” variety from the “Terroir” of Montigny-Lès-Arsures (France)

Seven plots located in the commune of Montigny-lès-Arsures (Jura, 39), planted with grapevine varieties Trousseau and Savagnin, were chosen for a study of soil pits and a distribution of major and trace chemical elements in soils and wines. It was shown that the mineral matrix of the soil reflects the geological substratum and the sub-surface alteration process, while the organic soil matrix depends on agro-viticultural practices.