Terroir 2020 banner
IVES 9 IVES Conference Series 9 Microbial metagenomics of vineyard soils and wine terroir

Microbial metagenomics of vineyard soils and wine terroir

Abstract

Aims: The aims of this study were to (i) characterize bacterial and fungal communities in selected Australian vineyard soils and (ii) determine if the soil microbiome composition and diversity varied between different zones within a vineyard. 

Rationale: The soil on which vines are grown has been suggested to impart a unique quality to the grapes and wine due to the physiological responses of the vines to soil type, topography and climatic conditions, in addition to their viticultural management. The influence of bacteria and fungi in wine fermentation is well known but little is known about the effect of soil microbes, other than microbial pathogens, on grape composition or their role in vintage or site (terroir) impacts on grape composition. 

Methods and Results: We investigated the potential relationships between soil microbiome composition measured using a metagenomic approach (16S rRNA and ITS region amplicon and metagenomic sequencing) and inherent spatial variation in grape metabolite composition, specifically the concentration of the ‘impact aroma compound’ rotundone in Shiraz grapes (Vitis vinifera L.) grown in vineyards in the Grampians region of Victoria and in the Adelaide Hills in South Australia. Results from the metagenomics analysis of surface soil samples collected from the previously identified ‘rotundone zones’ in a vineyard indicated marked differences in the genetic diversity and composition of the soil bacterial and fungal microbiomes of these zones. Soils from the high rotundone zone exhibited higher diversity of bacteria, but lower diversity of fungi, compared to the soils in the Low rotundone zone. In addition, the network analysis of the microbial community in the High rotundone zone soils appeared well structured, especially with respect to the bacterial community, compared to that in the Low rotundone zone soils. A few specific taxa/groups of microorganisms e.g. Acidobacteria-GP4 and GP7, Rhizobiales, Burkholdiales, Gaiellales, Alphaproteobacteria and the Nectriaceae and Tremellaceae families of fungi, were associated with the rotundone-based variation. Short-term mulching effects did not seem to mask the rotundone zone-based variation. Predictive functional profiling using 16S rRNA marker gene sequences, FAPROTAX-based analysis indicated differences in functional categories such as manganese oxidation, methylotrophy, methanotrophy, oxidation of sulfur compounds. These findings suggest that the observed taxonomic variation needs to be translated into functional aspects of soil microbiome before mechanistic links to rotundone concentrations can be established.

Conclusions:  

Distinct differences in soil bacterial and fungal community composition and structure in different zones within the same vineyard are associated with different propensities for grape berry rotundone concentration. Also, high rotundone zone soil exhibited a well-connected microbial community network by comparison with the Low rotundone zone soil.

Significance and impact of the Study: These findings of a systematic rotundone zone-based variation in soil microbiomes paves the way to bring together understanding of microbial ecology and viticultural management for improved grape composition and wine flavour (terroir).

DOI:

Publication date: March 17, 2021

Issue: Terroir 2020

Type: Video

Authors

Vadakattu Gupta1, Rob Bramley1, Paul Greenfield2, Julian Yu3, Markus Herderich4

1CSIRO Ag & Food, Urrbrae, SA, Australia 
2CSIRO Energy, North Ryde, NSW, Australia 
3Arizona State University, Arizona, USA 
4AWRI, Urrbrae, SA, Australia

Contact the author

Keywords

Rotundone, microbiome diversity, bacteria, fungi, grapes

Tags

IVES Conference Series | Terroir 2020

Citation

Related articles…

Zoning of viticulture in Yugoslavia

The last official zoning of Viticulture in Yugoslavia was performed 1978. year, when (according to recommendation of OIV and European Economic Community), regions, sub regions and vineyards districts were established supposing that the varieties which will be exhibit ail the positive agro biological and technological characteristics.

Investigation on harvesting period choices for correct interpretation of experimental results

Happens too often in scientific papers to find the same harvesting period of a cultivar, although the used treatment influence a maturity curve of investigated thesis.
This inevitably leads to wrong conclusions when comparing the treatment effects, since obtained on maturity stages more or less far from those technologically correct.

Sustainable viticulture’ the “semi‐minimal” pruned “hedge” system for grape vines long term experience on cv. Sangiovese (Vitis vinifera L.)

In previous experiments carried out in Bologna on Sangiovese grapevines raised with the Australian “Minimal Pruning” system, it has been shown that this system left an excessive burden of buds on the vine.

Nitrogen – Lipid Balance in alcoholic fermentations. Example of Champagne musts

Nutrient availability – nitrogen, lipids, vitamins or oxygen – has a major impact on the kinetics of winemaking fermentations. Nitrogen is usually the growth-limiting nutrient and its availability determines the fermentation rate, and therefore the fermentation duration. In some cases, in particular in Champagne, grape musts have high nitrogen concentrations and are sometimes clarified with turbidity below 50 NTU. In these conditions, lipid deficiencies may occur and longer fermentations can be observed. To better understand this situation, a study was realized using a synthetic medium simulating the composition of a Champagne must : 180 g/L of sugar, 360 mg/L of assimilable nitrogen and a lipid content ranging from 1 to 8 mg/L of phytosterols (mainly β-sitosterol).

The Pampa and the vineyard: gaucho´s natural and symbolic aspects in the identity´s constitution of “Vinhos da Campanha”’s terroir – RS/Brasil

The wine region of “Vinhos da Campanha” is located in southern Brazil, on the Uruguay borderline. The colonization’s process in the region was characterized by territorial disputes between Portuguese