Harnessing whole genome sequencing data to predict protein structure and function variation in grapevine

The chemical composition of wines depends on series of variables such as the type of grape, edaphoclimatic conditions, and viticulture and winemaking practices employed during production. Metallic elements play a significant role during winemaking (e.g. as catalysts of oxidation reactions) and have been previously employed for the classification of wines according to provenance. In this work, we focused on the analysis of metallic elements (K, Na, Ca, Zn, Cu, Fe, Mg, Mn, Ni, Cr, Al, Pb, Cd, Hg, Se, Co, Sn and As) in 145 Chilean wine samples (102 reds and 43 white wines), of seven grape varieties, and five of the major wine producing regions in Chile.

Climate change will increase the frequency of water deficit experienced in certain european regions, due to increased evapotranspiration and reduced rainfall during the growing cycle. We therefore need to find ways of adaption, including the use of more drought-tolerant planting material. In addition to the varieties used as grafts and involved in the wine ypicity of our wines, rootstocks selection is a relevant way of adapting to more restrictive environmental conditions.

Grape Phylloxera (Daktulosphaira vitifoliae Fitch) ordinarily has great difficulty establishing leaf galls on the European Grapevine (VitisviniferaL.). Yet populations of leaf-feeding Phylloxera are increasingly being observed throughout commercial vineyards world-wide. Effective plant protection strategies including quarantine actions are currently missing to fight, grape phylloxera populations in affected vineyards and combat linked negative effects on vines and yield. Contrary to the otherwise mandatory continuous infestation pressure from externally established populations (e.g. from populations developed on rootstock foliage or other interspecific hybrids, these leaf-feeding populations seem to establish themselves annually.

Extreme climatic events, such as prolonged drought followed by intense flooding, increasingly impact viticulture, affecting vine physiology, productivity, and grape composition.

Climate change is here. One of the main consequences is an increase in the frequency and severity of abiotic stresses which mostly occur in a combined manner. Grapevine, which grows in a large diversity of pedo-climatic conditions, has presumably evolved different mechanisms to allow this widespread adaptation. Harnessing the genetic diversity in these mechanisms will be central to the future of viticulture in many traditional wine growing areas. The interactions between the scion and the rootstock through grafting add an additional level of diversity and adaptive potential to explore.
At the physiological level, these mechanisms are related to processes such as root system development and functioning (water and nutrient uptake), interactions with the soil microbiome, gas exchange regulation, hydraulic properties along the soil-plant-atmosphere continuum, reserve storage, short and long distance signaling mechanisms and plasticity for some of these traits.