terclim by ICS banner
IVES 9 IVES Conference Series 9 International Congress on Grapevine and Wine Sciences 9 2ICGWS-2023 9 Tackling the 3D root system architecture of grapevines: a new phenotyping pipeline based on photogrammetry

Tackling the 3D root system architecture of grapevines: a new phenotyping pipeline based on photogrammetry

Abstract

Plant roots fulfil important functions as they are responsible for the acquisition of water and nutrients, for anchorage and stability, for interaction with symbionts and, in some cases, for the storage of carbohydrates. These functions are associated with the Root System Architecture (RSA, i.e. the form and the spatial arrangement of the roots in the soil). The RSA results from several biological processes (elongation, ramification, mortality…) genetically determined but with high structural plasticity. In grapevine, several factors can influence the RSA development (e.g. rootstock and scion genotypes, soil and plant management…). However, the effects of all these factors on the establishment of the RSA and associated functions (e.g. drought tolerance) have hardly ever been assessed. Such an assessment could help to improve the management of vineyards in our changing world. This lack of knowledge is mainly associated to methodological difficulties to characterize the RSA during grapevine development in the vineyard. To take up this challenge, we developed a new phenotyping pipeline, connecting photogrammetric data (produced by ArcheovisionProduction) with plant structures reconstruction software (PlantScan3D) and two packages dedicated to plant architecture analysis and visualisation (MTG and PlantGL from the OpenAlea platform). This new approach was developed on the uprooted root systems of two perennial species: grapevine and maritime pine. Their robustness was evaluated by comparing root traits estimated by this pipeline to root traits measured manually or estimated by a reference technique (semi-automated 3D digitizing, used on maritime pine root systems [1]). With this pipeline, we have planned to characterize the RSA of different rootstock genotypes, from different plantation types, soil management or water treatments, and at several developmental stages. All these data will be used to calibrate a functional-structural root model to facilitate the selection of plant material aimed to overcome the negative effects of climate change.

Acknowledgements: This work was financially supported by the Environmental Sciences department of the University of Bordeaux (“PROJETS EMERGENTS”).

References:
1)  Danjon, F. and Reubens, B. (2008) Assessing and analyzing 3D architecture of woody root systems, a review of methods and applications in tree and soil stability, resource acquisition and allocation. Plant and soil, 303, 1-34

DOI:

Publication date: October 11, 2023

Issue: ICGWS 2023

Type: Poster

Authors

Clément Saint Cast1*, Céline Meredieu2, Jean-Pascal Tandonnet1, Nathalie Ollat1, Frédéric Boudon3,4, Raphaël Ségura2, Pascal Mora5, Frédéric Danjon2

1EGFV, University of Bordeaux, Bordeaux Sciences Agro, INRAE, ISVV, 33882 Villenave d’Ornon, France
2BioGeCo, University of Bordeaux, INRAE, 33610, Cestas, France
3AGAP Institut, University of Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
4CIRAD, UMR AGAP Institut, F-34398 Montpellier, France
5Archéovision, University of Bordeaux Montaigne, 33000, Bordeaux, France

Contact the author*

Keywords

root system architecture, 3D phenotyping, Vitis sp., Pinus pinaster, photogrammetry, architectural analysis

Tags

2ICGWS | ICGWS | ICGWS 2023 | IVES Conference Series

Citation

Related articles…

Vineyard management practices to reduce sugar content on ‘Monastrell’ grapes

Climate change is resulting in more dry and hot summers, accelerating grape ripening and increasing berry sugars concentration. This results in wines with a higher alcohol content, which has a negative impact on wine quality, as well as, on consumer health. Agronomic practices that minimize these effects on berry composition and, consequently, on wine quality must be defined. In this work, different management practices have been assessed on rainfed ‘Monastrell’ grapevines in Jumilla (Murcia, Spain) from 2021 to 2023 vintages. Mulching, shading, application of kaolin and different types of pruning were evaluated, among others field adaptation practices.

Qualitative and productive characterization of a minority variety: ‘Branco lexítimo’ in DO Ribeira Sacra (Spain)

The actual climate changes, together with the strong regulation of the European Union and Spanish government, in search of sustainable viticulture, have forced the recovery of minority varieties, expanding the range of grape varieties, as well as the possible development of wines with unique profiles. In the Ribeira Sacra DO (Spain), a comparative study of the agronomic and qualitative behavior of the ‘Branco lexítimo’ variety has been carried out, compared to the majority white variety in the DO: ‘Godello’, located in the same study plot, with identic soil and climatic conditions. The study contemplated the analysis of phenology and leaf water potential, as well as the productive results and the analysis of the must quality, during four seasons: 2018 – 2021.

Model-assisted analysis of the root traits underlying RSA genotypic diversity in Vitis: a promising approach for rootstock selection?

By dissecting the root system architecture (RSA) into its underpinning components (e.g. root emission, axial growth, radial growth, branching, root direction or tropism) and identifying the relationships between them, functional-structural 3D root models are promising tools for analyzing the diversity and complexity of root system phenotypes with Genotype × Environment interactions. The model parameters are assumed to be synthetic traits, less influenced by the environment, and consequently with less polygenic architectures than the integrative RSA traits they drive. Root models can serve as a basis for in silico development of root system ideotypes by highlighting the developmental processes and parameters that most likely influence RSA fitness.

Influence of p-Coumaric Acid and Micronutrients on Growth and 4-Ethylphenol Production by Brettanomyces bruxellensis

The wine spoilage caused by Brettanomyces bruxellensis is one of the global concerns for winemakers. Detecting the presence of B. bruxellensis using routine laboratory culture techniques becomes challenging when cells enter the viable but not culturable (VBNC) state. This study aims to investigate the impact of p-coumaric acid (a volatile phenol precursor) and micronutrients on B. bruxellensis’ culturability, viability, and volatile phenol production under sulfite stress. In red wine, exposure to a high sulfite dose (100.00 mg L-1 potassium metabisulfite) resulted in immediate cell death, followed by a recovery of culturability after two weeks.

Phenolic composition profile of cv. Tempranillo wines obtained from severe shoot pruning vines under semiarid conditions

One of the limitations of vineyards in warm areas is the loss of wine quality due to higher temperatures during the grape ripening period. In order to adapt the vineyards to these new climatic conditions, a possible solution is to delay the ripening process of the grapes towards periods with milder temperatures, by means of management practices and thus improve the quality of the fruit and the wine produced. The technique of severe shoot pruning (SSP) has proven useful in achieving this objective.