terclim by ICS banner
IVES 9 IVES Conference Series 9 International Congress on Grapevine and Wine Sciences 9 2ICGWS-2023 9 Tackling the 3D root system architecture of grapevines: a new phenotyping pipeline based on photogrammetry

Tackling the 3D root system architecture of grapevines: a new phenotyping pipeline based on photogrammetry

Abstract

Plant roots fulfil important functions as they are responsible for the acquisition of water and nutrients, for anchorage and stability, for interaction with symbionts and, in some cases, for the storage of carbohydrates. These functions are associated with the Root System Architecture (RSA, i.e. the form and the spatial arrangement of the roots in the soil). The RSA results from several biological processes (elongation, ramification, mortality…) genetically determined but with high structural plasticity. In grapevine, several factors can influence the RSA development (e.g. rootstock and scion genotypes, soil and plant management…). However, the effects of all these factors on the establishment of the RSA and associated functions (e.g. drought tolerance) have hardly ever been assessed. Such an assessment could help to improve the management of vineyards in our changing world. This lack of knowledge is mainly associated to methodological difficulties to characterize the RSA during grapevine development in the vineyard. To take up this challenge, we developed a new phenotyping pipeline, connecting photogrammetric data (produced by ArcheovisionProduction) with plant structures reconstruction software (PlantScan3D) and two packages dedicated to plant architecture analysis and visualisation (MTG and PlantGL from the OpenAlea platform). This new approach was developed on the uprooted root systems of two perennial species: grapevine and maritime pine. Their robustness was evaluated by comparing root traits estimated by this pipeline to root traits measured manually or estimated by a reference technique (semi-automated 3D digitizing, used on maritime pine root systems [1]). With this pipeline, we have planned to characterize the RSA of different rootstock genotypes, from different plantation types, soil management or water treatments, and at several developmental stages. All these data will be used to calibrate a functional-structural root model to facilitate the selection of plant material aimed to overcome the negative effects of climate change.

Acknowledgements: This work was financially supported by the Environmental Sciences department of the University of Bordeaux (“PROJETS EMERGENTS”).

References:
1)  Danjon, F. and Reubens, B. (2008) Assessing and analyzing 3D architecture of woody root systems, a review of methods and applications in tree and soil stability, resource acquisition and allocation. Plant and soil, 303, 1-34

DOI:

Publication date: October 11, 2023

Issue: ICGWS 2023

Type: Poster

Authors

Clément Saint Cast1*, Céline Meredieu2, Jean-Pascal Tandonnet1, Nathalie Ollat1, Frédéric Boudon3,4, Raphaël Ségura2, Pascal Mora5, Frédéric Danjon2

1EGFV, University of Bordeaux, Bordeaux Sciences Agro, INRAE, ISVV, 33882 Villenave d’Ornon, France
2BioGeCo, University of Bordeaux, INRAE, 33610, Cestas, France
3AGAP Institut, University of Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
4CIRAD, UMR AGAP Institut, F-34398 Montpellier, France
5Archéovision, University of Bordeaux Montaigne, 33000, Bordeaux, France

Contact the author*

Keywords

root system architecture, 3D phenotyping, Vitis sp., Pinus pinaster, photogrammetry, architectural analysis

Tags

2ICGWS | ICGWS | ICGWS 2023 | IVES Conference Series

Citation

Related articles…

A novel approach for the identification of new biomarkers of wine consumption in human urine using untargeted metabolomics

Wine is one of the most representative components of Mediterranean diet. Moderate wine intake together with food, has been positively correlated with reduced risk of many chronic diseases. This beneficial effect seems to be ascribed to elevated polyphenolic content of wine [1]. Traditional approaches for the identification of wine biomarkers consumption include targeted metabolomics that focuses on the quantification of well-defined metabolites, losing a valuable information about a massive number of compounds. On the other hand, untargeted metabolomics can disclose a large quantity of signals corresponding to potential biomarkers in a single analysis with high sensitivity and resolution.

Understanding the impact of rising temperatures due to climate change on aromatic compositions in Malbec wines from Mendoza, Argentina

Mendoza is one of Argentina’s most important and outstanding wine regions producing the renowned Malbec wines due to its optimal soil and weather conditions. However, the effects of 21st-century climate change would negatively impact Malbec wines quality. This study investigated the effect of temperature increase and the impact of plant hormone abscisic acid (ABA) used to mitigate the negative effect of temperature increase on Malbec wines aromatic composition through GC-MS. Four treatments were applied on vines at field condition: Control, Control + 3 ºC, ABA and ABA + 3 ºC.

The interplay between water deficit and nitrogen and potassium nutrition in Vitis vinifera L.

Climate change is expected to provoke an increase in the frequency and intensity of drought events and water scarcity that will have detrimental effects on photosynthesis and plant yield. To sustain an appropriate plant yield under sub-optimal conditions, a common practice is the application of high amounts of fertilizers with negative environmental consequences. The present study aims at evaluating the interplay between water and nutrient availability, namely nitrogen (N) and potassium (K), in two grapevine cultivars with a different sensitivity to water shortage stress. Two-year-old Vitis Vinifera cv. Cabernet Sauvignon and Grenache grapevine plants grafted on SO4 rootstock have been transferred in pots under semi-environmental conditions.

Possible methods of adaptation to the effects of climate change in the Tokaj Wine Region 

Viticulture’s adaptation to the harmful effects of climate change is globally the biggest challenge of the near future. Short, extremely intensive rainfalls and longer periods of drought are getting more frequent in the Tokaj Wine Region, where the majority of the vineyards are cultivated on steep slopes. Hence, erosion has high risk, especially when combined with the loess-based soils on about ten percent of the region. The environmentally beneficial cover crop and mulch usage can effectively reduce the risk of erosion, according to research done by the Tokaj Wine Region Research Institute of Viticulture and Oenology.

Comparison of ancestral and traditional methods in the elaboration of sparkling wines; preliminary results

Top quality sparkling wines (SW) are mostly produced using the traditional method that implies a second fermentation into the bottle[1]. That is the case of sparkling wines of reputed AOC such as Champagne, Cava or Franciacorta. However, it seems that the first SW was elaborated using the ancestral method in which only one fermentation takes place[2]. That is the case of the classical SW from the AOC Blanquette de Limoux[3]. In both cases, SW age in the bottle during some time in contact with lees favoring yeast’s autolysis[4]. There is a lot of information about traditional method but only few exists about ancestral method. The aim of this work was to compare SW made by the ancestral method with SW made by the traditional method.