terclim by ICS banner
IVES 9 IVES Conference Series 9 International Congress on Grapevine and Wine Sciences 9 2ICGWS-2023 9 Tackling the 3D root system architecture of grapevines: a new phenotyping pipeline based on photogrammetry

Tackling the 3D root system architecture of grapevines: a new phenotyping pipeline based on photogrammetry

Abstract

Plant roots fulfil important functions as they are responsible for the acquisition of water and nutrients, for anchorage and stability, for interaction with symbionts and, in some cases, for the storage of carbohydrates. These functions are associated with the Root System Architecture (RSA, i.e. the form and the spatial arrangement of the roots in the soil). The RSA results from several biological processes (elongation, ramification, mortality…) genetically determined but with high structural plasticity. In grapevine, several factors can influence the RSA development (e.g. rootstock and scion genotypes, soil and plant management…). However, the effects of all these factors on the establishment of the RSA and associated functions (e.g. drought tolerance) have hardly ever been assessed. Such an assessment could help to improve the management of vineyards in our changing world. This lack of knowledge is mainly associated to methodological difficulties to characterize the RSA during grapevine development in the vineyard. To take up this challenge, we developed a new phenotyping pipeline, connecting photogrammetric data (produced by ArcheovisionProduction) with plant structures reconstruction software (PlantScan3D) and two packages dedicated to plant architecture analysis and visualisation (MTG and PlantGL from the OpenAlea platform). This new approach was developed on the uprooted root systems of two perennial species: grapevine and maritime pine. Their robustness was evaluated by comparing root traits estimated by this pipeline to root traits measured manually or estimated by a reference technique (semi-automated 3D digitizing, used on maritime pine root systems [1]). With this pipeline, we have planned to characterize the RSA of different rootstock genotypes, from different plantation types, soil management or water treatments, and at several developmental stages. All these data will be used to calibrate a functional-structural root model to facilitate the selection of plant material aimed to overcome the negative effects of climate change.

Acknowledgements: This work was financially supported by the Environmental Sciences department of the University of Bordeaux (“PROJETS EMERGENTS”).

References:
1)  Danjon, F. and Reubens, B. (2008) Assessing and analyzing 3D architecture of woody root systems, a review of methods and applications in tree and soil stability, resource acquisition and allocation. Plant and soil, 303, 1-34

DOI:

Publication date: October 11, 2023

Issue: ICGWS 2023

Type: Poster

Authors

Clément Saint Cast1*, Céline Meredieu2, Jean-Pascal Tandonnet1, Nathalie Ollat1, Frédéric Boudon3,4, Raphaël Ségura2, Pascal Mora5, Frédéric Danjon2

1EGFV, University of Bordeaux, Bordeaux Sciences Agro, INRAE, ISVV, 33882 Villenave d’Ornon, France
2BioGeCo, University of Bordeaux, INRAE, 33610, Cestas, France
3AGAP Institut, University of Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
4CIRAD, UMR AGAP Institut, F-34398 Montpellier, France
5Archéovision, University of Bordeaux Montaigne, 33000, Bordeaux, France

Contact the author*

Keywords

root system architecture, 3D phenotyping, Vitis sp., Pinus pinaster, photogrammetry, architectural analysis

Tags

2ICGWS | ICGWS | ICGWS 2023 | IVES Conference Series

Citation

Related articles…

Grapevine cane pruning extract enhances plant physiological capacities and decreases phenolic accumulation in canes and leaves 

Vine cane extracts are a valuable byproduct due to their rich content of polyphenols, vitamins, and other beneficial compounds, which can affect and benefit the vine and the grapes. This study aims to evaluate the response of grapevine plants to irrigation with water supplemented with a vine cane extract, both at physiology response and phenolic composition in different parts of the plant (root, trunk, shoot, leaf, and berry).
Cane extract was obtained by macerating crushed pruning residues with warm water (5:1) and pectolytic enzymes. Two-year-old potted plants were irrigated with water (Control) while others were irrigated with cane extracts, either at 1:4 (w/v, cane extract/water; T 1:4) or at 1:8 (w/v, cane extract/water; T 1:8).

Correlative study between degradation of rosé wine under accelerated conditions and under normal conditions

Several studies have tried to develop different methods to study the photodegradation of wine in an accelerated way, trying to elucidate the effect of light on the wine compounds[1]. In a previous study, our team developed a chamber that speeds up the photodegradation of rosé wine[2]. In the present work we have tried to establish a correlation between irradiation times in accelerated conditions and the natural exposure to the cycles of light that usually exist in markets or at home.

Control of bacterial growth in carbonic maceration winemaking through yeast inoculation

Controlling the development of the bacterial population during the winemaking process is essential for obtaining correct wines[1]. Carbonic Maceration (CM) wines are recognised as high-quality young wines. However, due to its particularities, CM winemaking implies a higher risk of bacterial growth: lower SO2 levels, enrichment of the must in nutrients, oxygen trapped between the clusters… Therefore, wines produced by CM have slightly higher volatile acidity values than those produced by the destemming/crushing method[2].

Wine odors: chemicals, physicochemical and perceptive processes involved in their perception

The odors of wines are diverse, complex and dynamic and much research has been devoted to the understanding of their chemical bases. However, while the “basic” chemical part of the problem, namely the identity of the chemicals responsible for the different odor nuances, was satisfactorily solved years ago, there are some relevant questions precluding a clear understanding. These questions are related to the physicochemical interactions determining the effective volatilities of the odorants and, particularly, to the perceptual interactions between different odor molecules affecting in different ways to the final sensory outputs.

Sustainable management of grapevine trunk diseases

Grapevine trunk diseases (GTD) occur wherever grapes are grown and are considered the main biotic factor reducing yields and shortening vineyards’ lifespan. Currently, no product is available to eradicate GTD once grapevines are infected. Therefore, prophylactic strategies based on pruning wound protection and ‘remedial surgery’, the only eradication method based on the elimination of infected wood and renewal of the vine by means of new canes or suckers, are the only effective strategies available. The Canadian grape and wine industry focusses on a sustainable production and thus, looking for alternatives to chemicals for disease management is a top priority.