terclim by ICS banner
IVES 9 IVES Conference Series 9 International Congress on Grapevine and Wine Sciences 9 2ICGWS-2023 9 Tackling the 3D root system architecture of grapevines: a new phenotyping pipeline based on photogrammetry

Tackling the 3D root system architecture of grapevines: a new phenotyping pipeline based on photogrammetry

Abstract

Plant roots fulfil important functions as they are responsible for the acquisition of water and nutrients, for anchorage and stability, for interaction with symbionts and, in some cases, for the storage of carbohydrates. These functions are associated with the Root System Architecture (RSA, i.e. the form and the spatial arrangement of the roots in the soil). The RSA results from several biological processes (elongation, ramification, mortality…) genetically determined but with high structural plasticity. In grapevine, several factors can influence the RSA development (e.g. rootstock and scion genotypes, soil and plant management…). However, the effects of all these factors on the establishment of the RSA and associated functions (e.g. drought tolerance) have hardly ever been assessed. Such an assessment could help to improve the management of vineyards in our changing world. This lack of knowledge is mainly associated to methodological difficulties to characterize the RSA during grapevine development in the vineyard. To take up this challenge, we developed a new phenotyping pipeline, connecting photogrammetric data (produced by ArcheovisionProduction) with plant structures reconstruction software (PlantScan3D) and two packages dedicated to plant architecture analysis and visualisation (MTG and PlantGL from the OpenAlea platform). This new approach was developed on the uprooted root systems of two perennial species: grapevine and maritime pine. Their robustness was evaluated by comparing root traits estimated by this pipeline to root traits measured manually or estimated by a reference technique (semi-automated 3D digitizing, used on maritime pine root systems [1]). With this pipeline, we have planned to characterize the RSA of different rootstock genotypes, from different plantation types, soil management or water treatments, and at several developmental stages. All these data will be used to calibrate a functional-structural root model to facilitate the selection of plant material aimed to overcome the negative effects of climate change.

Acknowledgements: This work was financially supported by the Environmental Sciences department of the University of Bordeaux (“PROJETS EMERGENTS”).

References:
1)  Danjon, F. and Reubens, B. (2008) Assessing and analyzing 3D architecture of woody root systems, a review of methods and applications in tree and soil stability, resource acquisition and allocation. Plant and soil, 303, 1-34

DOI:

Publication date: October 11, 2023

Issue: ICGWS 2023

Type: Poster

Authors

Clément Saint Cast1*, Céline Meredieu2, Jean-Pascal Tandonnet1, Nathalie Ollat1, Frédéric Boudon3,4, Raphaël Ségura2, Pascal Mora5, Frédéric Danjon2

1EGFV, University of Bordeaux, Bordeaux Sciences Agro, INRAE, ISVV, 33882 Villenave d’Ornon, France
2BioGeCo, University of Bordeaux, INRAE, 33610, Cestas, France
3AGAP Institut, University of Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
4CIRAD, UMR AGAP Institut, F-34398 Montpellier, France
5Archéovision, University of Bordeaux Montaigne, 33000, Bordeaux, France

Contact the author*

Keywords

root system architecture, 3D phenotyping, Vitis sp., Pinus pinaster, photogrammetry, architectural analysis

Tags

2ICGWS | ICGWS | ICGWS 2023 | IVES Conference Series

Citation

Related articles…

Late pruning, an alternative for rainfed vine varieties facing new climatic conditions

In Chile there is a dry farming area known as a traditional wine region, where varieties brought by the Spanish conquerors still persist. These varieties, in general, are cultivated under traditional systems, with low use of technical and economic resources, and low profitability for their grapes and wines. In this region, as in other wine grape growing areas, climatic conditions have changed significantly in recent decades. In particular, the occurrence of spring frosts, when bud break has already begun, have generated significant losses for these growers.

REGAVID a decision tool to deficit irrigation in a temperate climate (DO Monterrei – Spain)

In temperate climates, such as in the North of Spain, the use of irrigation in the vineyard has not been required, due to the usual rainfall from June to August. In some large vineyards, irrigation management has been carried out, based on occasional support irrigation, or for the application of nutrients (fertigation). Currently it is necessary to implement decision support models to manage irrigation water in real time and avoid misuse of a scarce resource. Moreover, quality standards must be achieved, as in the previous rainfed viticulture.

Water availability at budbreak time in vineyards that are deficitary irrigated during the summer: Effect on must volatile composition


In recent years, Mediterranean regions are being affected by marked climate changes, primarily characterized by reduced precipitation, greater concurrence of temperature extremes and drought during the growing season, and increased inter-annual variability in temperatures and rainfall. Generally, high-quality red wines need moderate water deficit. Hence, irrigation may be needed to avoid severe vine water stress occurring in some vintages and soils with low holding capacity. The aim of this work was to evaluate the effects of soil recharge irrigation in pre-sprouting and summer irrigation every week (30 % ETO) from the pea size state until the end of ripening (RP) compared to exclusively summer irrigation every week (R) in the same way that RP, on must volatile composition at harvest.

The weak role of organic mulches in shaping bacterial communities in grapevine

The interest in sustainable and ecologic agricultural practices in grapevine has grown significantly in recent years in the context of ecological transition. Organic mulches are treatments that support the circular economy and positively affect the soil and the plant. They are an alternative to herbicides and other conventional practices since they may influence soil moisture, erosion, structure and weed control. However, their effects on the soil and must microbiota remain unknown.

Metabolomic insights into wine’s sensory identity: unveiling climate-driven changes in aroma composition

Wine, a sensitive and intricate agricultural product, is being affected by climate change, which accelerates grapevine phenological stages and alters grape composition and ripening. This influences the synthesis of key aroma compounds, shaping wine’s sensory attributes [1]. The complex aroma profile, resulting from compound interactions, presents a metabolomics challenge to identify these indicators and their environmental change responses, which is being addressed using diverse analytical techniques.