terclim by ICS banner
IVES 9 IVES Conference Series 9 Tracking the origin of Tempranillo Tinto through whole genome resequencing and high-throughput genotyping  

Tracking the origin of Tempranillo Tinto through whole genome resequencing and high-throughput genotyping  

Abstract

Grapevine cultivars are vegetatively propagated to maintain their varietal characteristics. This process of multiplication leads to spontaneous somatic mutations that can eventually generate a variant phenotype, of potential interest for cultivar improvement and innovation. However, regardless their phenotypic effect, somatic mutations stack in the genome, and they can be used to reveal the origin and dissemination history of ancient cultivars. Here, a stringent somatic variant calling over whole genome resequencing data from 35 ‘Tempranillo Tinto’ clones or old vines from seven Iberian winemaking regions revealed 135 single nucleotide variations (SNVs) shared by some of the clonal lines. Among them, we selected 56 highly informative SNVs to custom-design a high-throughput genotyping chip for this cultivar, which was validated and further tested in 94 ‘Tempranillo Tinto’ vines from highly diverse regions. Phylogenetic analyses revealed that ‘Tempranillo Tinto’ samples grouped in three major clonal lineages, a clustering that reflected the geographic origin of the samples. After combining these results with genome re-sequencing data from the two ‘Tempranillo Tinto’ parents, we found the Ebro River Valley as the most likely region of origin for ‘Tempranillo Tinto’. Results also revealed one major historical dissemination route that likely progressed westwards from this original site, towards the main winemaking regions found across the Duero River Valley and to the South in Portugal. Collectively, the results obtained in this study shed light on the origin and historical dispersal of ‘Tempranillo Tinto’ in the Iberian Peninsula, and released highly informative SNVs for the differentiation of intra-cultivar lineages.

DOI:

Publication date: June 14, 2024

Issue: Open GPB 2024

Type: Poster

Authors

Javier Tello1*, Pablo Carbonell-Bejerano1, Rafael Torres-Pérez2, Yolanda Ferradás1,3, Carolina Royo1, Juan Carlos Oliveros2, Javier Ibáñez1, José Miguel Martínez-Zapater1

1 Instituto de Ciencias de la Vid y del Vino, Finca La Grajera, Ctra. de Burgos Km. 6, 26007 Logroño.
2 Centro Nacional de Biotecnología, C/Darwin 3, 28049 Madrid.
3 Current address: Facultad de Biología, Universidad de Santiago de Compostela, 15872 Santiago de Compostela

Contact the author*

Keywords

clonal lineage, grapevine, Iberian Peninsula, phylogenomics, SNV

Tags

IVES Conference Series | Open GPB | Open GPB 2024

Citation

Related articles…

Cultivo de la Malvasia en Tenerife

El archipiélago Canario, conocido en el pasado como las Islas del Vino, fue una gran potencia en la elaboración y comercialización del vino, sobre todo de caldos elaborados con la variedad Malvasía.

The sensitivity to ABA affects the cross-talk between scion/rootstock in tolerant grapevines to drought stress

Drought caused by climate change has a dramatic incidence on the vineyard. Despite employing specific rootstocks tolerant to drought like 110 Richter, the vineyard continues to experience various losses, revealing the importance of the scion cultivar in the adaptation to drought stress. In this regard, Merlot, a widely cultivated grapevine, exhibited reduced drought tolerance compared to less cultivated varieties like Callet, a local cultivar originating from the Balearic Islands that demonstrated greater resilience to drought. Therefore, understanding the drought stress response in both cultivars and the cross-talk between scion and rootstock is key to unveiling possible differences that could affect to the adaptation to drought in vineyard.

Microbial life in the grapevine: what can we expect from the leaf microbiome?

The above-ground parts of plants, which constitute the phyllosphere, have long been considered devoid of bacteria and fungi, at least in their internal tissues and microbial presence there was long considered a sign of disease. However, recent studies have shown that plants harbour complex bacterial communities, the so-called “microbiome”[1]. We are only beginning to unravel the origin of these bacterial plant inhabitants, their community structure and their roles, which in analogy to the gut microbiome, are likely to be of essential nature. Among their multifaceted metabolic possibilities, bacteria have been recently demonstrated to emit a wide range of volatile organic compounds (VOCs), which can greatly impact the growth and development of both the plant and its disease-causing agents.

Understanding the genetic determinism of phenological and quality traits in ‘Corvina’ grape variety for selection of improved genotypes

Downy and powdery mildew are major issues in grapevine cultivation, requiring many phytosanitary treatments to ensure yield and quality. Climatic changes are also challenging grape cultivation

New satellite-based sampling protocols for grapevine nutrient monitoring

Extension specialists often recommend nutrient monitoring through leaf blade or petiole sampling twice a season for each vineyard block. However, due to the time and labor required to collect a large, random sample, many growers complete the task infrequently or incorrectly. Readily available remote sensing images capture the vineyard variability at both spatial and temporal scales, which can capture canopy and soil variability and be used to guide growers to representative sampling locations.