terclim by ICS banner
IVES 9 IVES Conference Series 9 Tracking the origin of Tempranillo Tinto through whole genome resequencing and high-throughput genotyping  

Tracking the origin of Tempranillo Tinto through whole genome resequencing and high-throughput genotyping  

Abstract

Grapevine cultivars are vegetatively propagated to maintain their varietal characteristics. This process of multiplication leads to spontaneous somatic mutations that can eventually generate a variant phenotype, of potential interest for cultivar improvement and innovation. However, regardless their phenotypic effect, somatic mutations stack in the genome, and they can be used to reveal the origin and dissemination history of ancient cultivars. Here, a stringent somatic variant calling over whole genome resequencing data from 35 ‘Tempranillo Tinto’ clones or old vines from seven Iberian winemaking regions revealed 135 single nucleotide variations (SNVs) shared by some of the clonal lines. Among them, we selected 56 highly informative SNVs to custom-design a high-throughput genotyping chip for this cultivar, which was validated and further tested in 94 ‘Tempranillo Tinto’ vines from highly diverse regions. Phylogenetic analyses revealed that ‘Tempranillo Tinto’ samples grouped in three major clonal lineages, a clustering that reflected the geographic origin of the samples. After combining these results with genome re-sequencing data from the two ‘Tempranillo Tinto’ parents, we found the Ebro River Valley as the most likely region of origin for ‘Tempranillo Tinto’. Results also revealed one major historical dissemination route that likely progressed westwards from this original site, towards the main winemaking regions found across the Duero River Valley and to the South in Portugal. Collectively, the results obtained in this study shed light on the origin and historical dispersal of ‘Tempranillo Tinto’ in the Iberian Peninsula, and released highly informative SNVs for the differentiation of intra-cultivar lineages.

Download the abstract

DOI:

Publication date: June 14, 2024

Issue: Open GPB 2024

Type: Poster

Authors

Javier Tello1*, Pablo Carbonell-Bejerano1, Rafael Torres-Pérez2, Yolanda Ferradás1,3, Carolina Royo1, Juan Carlos Oliveros2, Javier Ibáñez1, José Miguel Martínez-Zapater1

1 Instituto de Ciencias de la Vid y del Vino, Finca La Grajera, Ctra. de Burgos Km. 6, 26007 Logroño.
2 Centro Nacional de Biotecnología, C/Darwin 3, 28049 Madrid.
3 Current address: Facultad de Biología, Universidad de Santiago de Compostela, 15872 Santiago de Compostela

Contact the author*

Keywords

clonal lineage, grapevine, Iberian Peninsula, phylogenomics, SNV

Tags

IVES Conference Series | Open GPB | Open GPB 2024

Citation

Related articles…

Could intermittent shading, as produced in agrivoltaics, mitigate global warming effects on grapevine?

Global warning increases evaporative demand and accelerates grapevine phenology. As a consequence, the ripening phase shifts to warmer and drier periods. This results in lower acidity and higher sugar levels in berries, yielding too alcoholic wines with altered organoleptic properties. Agrivoltaics, which combines crop and renewable energy production on the same land using photovoltaic panels, emerged as a promising innovation to counteract these impacts by partially shading the plants.

Read More

Blend wines made of Syrah, Marselan and Tannat, had better color and more phenolic diversity than varietal wines

Background: Elaborating red-wines from grape cultivars with different polyphenolic profiles could improve wine color and its phenolic-dependent characteristics

Read More

Screening of aroma metabolites within a set of 90 Saccharomyces strains

Currently, the main demand in the global wine market relies on products with unique flavour profiles, character, and typicity, and the metabolism of yeasts greatly influences the organoleptic properties of wines. Therefore, the natural diversity of Saccharomyces strains rises in interest over the last decade, but a large part of this phenotypic diversity remains unexplored

Read More

Three Nebbiolo clone anthocyanin profile as affected by environmental conditions

Vitis vinifera ‘Nebbiolo’ cultivar is a 3’-subsituted anthocyanin prevalent wine variety. It is grown in North-West Italy for the production of high quality ageing wines. In the present work berry skin anthocyanin amounts and profiles of the clones CVT 308, CVT 423 and CVT 142 were studied in 2004 and in 2005 in four environmentally different locations of North-West Italy: Donnas (steep mountain area), Monforte (hilly area, with a pH of 8.1), Vezza (hilly area, with a pH of 8.2) and Lessona (plain area, with a pH of 4.8).

Read More

Developmental and genetic mechanisms underlying seedlessness in grapevine somatic variants

Seedless table grapes are greatly appreciated for fresh and dry consumption. There is also some interest in seedless winegrapes, because the combination of lower fruit set, smaller berries with higher skin/pulp ratio and looser bunches with the absence of seeds in crushed berries, a possible source of astringent tannins, might also have favorable effects on wine quality.
The gene VviAGL11 has been shown to play a central role in stenospermocarpy in Sultanina, but the molecular bases of other sources of stenospermocarpy as well as of parthenocarpy have not been clarified yet.

Read More