terclim by ICS banner
IVES 9 IVES Conference Series 9 Digitalization and valorization of the genotypic and phenotypic information retained within the FEM grapevine germplasm

Digitalization and valorization of the genotypic and phenotypic information retained within the FEM grapevine germplasm

Abstract

The maintenance and valorization of genetic diversity is an undoubtable resource for the viticulture of the future, since the climate crisis is forcing us to think of new, more resilient varieties. For this reason, the grapevine germplasm of the Fondazione Edmund Mach has been continuously expanded in the last decade to a total of 3,120 accessions, whose trueness-to-type has been verified by means of the universal set of nine microsatellites. About two thirds are V. vinifera subsp. vinifera accessions, while the rest consists of naturalized and selected hybrids, V. vinifera subsp. sylvestris, and pure species. The genetic material has also been characterized over three consecutive years for ampelographic, vine development, and biotic stress response traits to be exploited for experimental purposes. All the data and metadata have been digitalized and hosted in a SQL database, the FEMVitisDB, developed with an ontology driven paradigm to annotate the deposited information. The database was built following the MIAPPE checklist to ensure data FAIRness. A RESTful WebServiceAPI based on BrAPI and a web frontend were developed to easily explore the information in the repository.
Findings about the captured genetic diversity, the identified unique profiles, and the scouted unknown and therefore novel genotypes will be discussed. The latter enrich the genetic asset of the grapevine community, towards the feeding of international databases. Where feasible, the first degree of parentage relationship has been reconstructed. Finally, the outcomes regarding the inferred phenological core collections will be introduced to provide an information arsenal for future ’omics analyses.

DOI:

Publication date: June 14, 2024

Issue: Open GPB 2024

Type: Poster

Authors

Paola Bettinelli1*, Daniela Nicolini1, Giulia Betta1, Daniele Migliaro2, Laura Costantini1, Geovani Luciano de Oliveira3, Silvano Clementi1, Luca Zulini1, Paolo Fontana1, Luca Bianco1, Marco Stefanini1, Diego Micheletti, Silvia Vezzulli

1 Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige (Trento), Italy
2 CREA – Research Centre for Viticulture and Enology, Conegliano (Treviso), Italy
3 Molecular Biology and Genetic Engineering Center (CBMEG), Universidade Estadual de Campinas (UNICAMP), Campinas, Brazil

§ equally contributed

Contact the author*

Keywords

Database, collection, breeding, kinship, Vitis

Tags

IVES Conference Series | Open GPB | Open GPB 2024

Citation

Related articles…

Oospore germination dynamics and disease forecasting model for a precision management of downy mildew 

Downy mildew, caused by Plasmopara viticola, is the most economically impactful disease affecting grapevines. This polycyclic pathogen triggers both primary and secondary infection cycles, resulting in significant yield losses when effective disease control measures are lacking. Over the winter, the pathogen survives by forming resting structures, the oospores, derived from sexual reproduction, which produce the inoculum for primary infections. To optimize grapevine downy mildew control and obtain the desired levels of production while minimizing chemical inputs, it is crucial to optimize the timeframe for fungicide application. Disease forecasting models are useful to identify the infection risk.

Elucidating the biological function of EPFL9 in grapevine roots

Epidermal Patterning Factors are a class of cysteine rich peptides known to be involved in many developmental processes. The role of EPF1, EPF2 and EPFL9 in controlling leaf stomata formation has been well described in model plants and cereals, and recently also in grapevine, while little is known about their activity in other organs. The aim of our study is to investigate whether VviEPFL9-2 can have a specific biological function in grapevine roots, where it resulted to be expressed. As grapevine is cultivated in the form of a grafted plant, we focused our study on the commonly used rootstock Kober 5BB (Vitis berlandieri x Vitis riparia). VviEPFL9-2 was edited in Kober 5BB plants using Agrobacterium tumefaciens transformation of embryogenic calli and the CRISPR/Cas9 technology. The phenotypic evaluation in greenhouse indicated that, as expected, the leaves of knock-out (KO) plants have a significant lower stomatal density compared to WT, associated with a lower stomatal conductance.

The aroma diversity of Italian white wines: a further piece added to the D-Wines project

The wide ampelographic heritage of the Italian wine grape varieties represents a richness in terms of biodiversity and potential market value.

Intelligent use of ethanol for the direct quantitative determination of volatile compounds in spirit drinks

The quality of any alcoholic beverage depends on many parameters, such as cultivars, harvesting time, fermentation, distillation technology used, quality and type of wooden barrels (in case of matured drinks), etc.; however, the most important factor in their classification is content of volatile compounds.

Pests and biodiversity management on a climate change scenario: A practical case

The weather anomalies comparing the 1971-2000 time frame and the last years has showned a dramatic scenario when, in some months, average temperature in above 3ºC and the reduction in precipitation in more than 30%.