terclim by ICS banner
IVES 9 IVES Conference Series 9 Digitalization and valorization of the genotypic and phenotypic information retained within the FEM grapevine germplasm

Digitalization and valorization of the genotypic and phenotypic information retained within the FEM grapevine germplasm

Abstract

The maintenance and valorization of genetic diversity is an undoubtable resource for the viticulture of the future, since the climate crisis is forcing us to think of new, more resilient varieties. For this reason, the grapevine germplasm of the Fondazione Edmund Mach has been continuously expanded in the last decade to a total of 3,120 accessions, whose trueness-to-type has been verified by means of the universal set of nine microsatellites. About two thirds are V. vinifera subsp. vinifera accessions, while the rest consists of naturalized and selected hybrids, V. vinifera subsp. sylvestris, and pure species. The genetic material has also been characterized over three consecutive years for ampelographic, vine development, and biotic stress response traits to be exploited for experimental purposes. All the data and metadata have been digitalized and hosted in a SQL database, the FEMVitisDB, developed with an ontology driven paradigm to annotate the deposited information. The database was built following the MIAPPE checklist to ensure data FAIRness. A RESTful WebServiceAPI based on BrAPI and a web frontend were developed to easily explore the information in the repository.
Findings about the captured genetic diversity, the identified unique profiles, and the scouted unknown and therefore novel genotypes will be discussed. The latter enrich the genetic asset of the grapevine community, towards the feeding of international databases. Where feasible, the first degree of parentage relationship has been reconstructed. Finally, the outcomes regarding the inferred phenological core collections will be introduced to provide an information arsenal for future ’omics analyses.

DOI:

Publication date: June 14, 2024

Issue: Open GPB 2024

Type: Poster

Authors

Paola Bettinelli1*, Daniela Nicolini1, Giulia Betta1, Daniele Migliaro2, Laura Costantini1, Geovani Luciano de Oliveira3, Silvano Clementi1, Luca Zulini1, Paolo Fontana1, Luca Bianco1, Marco Stefanini1, Diego Micheletti, Silvia Vezzulli

1 Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige (Trento), Italy
2 CREA – Research Centre for Viticulture and Enology, Conegliano (Treviso), Italy
3 Molecular Biology and Genetic Engineering Center (CBMEG), Universidade Estadual de Campinas (UNICAMP), Campinas, Brazil

§ equally contributed

Contact the author*

Keywords

Database, collection, breeding, kinship, Vitis

Tags

IVES Conference Series | Open GPB | Open GPB 2024

Citation

Related articles…

Genomics and phenomics of root system architecture in grapevine

Adapting viticulture to climate change is crucial, as it presents significant challenges for future grape production.

Grape phylloxera leaf-feeding populations in commercial vineyards – a new biotype ?

Grape Phylloxera (Daktulosphaira vitifoliae Fitch) ordinarily has great difficulty establishing leaf galls on the European Grapevine (VitisviniferaL.). Yet populations of leaf-feeding Phylloxera are increasingly being observed throughout commercial vineyards world-wide. Effective plant protection strategies including quarantine actions are currently missing to fight, grape phylloxera populations in affected vineyards and combat linked negative effects on vines and yield. Contrary to the otherwise mandatory continuous infestation pressure from externally established populations (e.g. from populations developed on rootstock foliage or other interspecific hybrids, these leaf-feeding populations seem to establish themselves annually.

Oligosaccharides from Vitis vinifera grape seeds: a focus on gentianose as a novel bioactive compound

AIM. Grape seeds (Vitis vinifera) are among the main constituents of grape pomace, also exploited in ingredients for nutraceutics and cosmeceutics, particularly regarding the phenolic fraction. The macromolecules of grape/wine include polyphenols, proteins and polysaccharides.

Optimizing disease management in the Rioja wine region: a study on Erisiphe necator and the Gubler-Thomas model

Erisiphe necator is endemic in the Rioja Appellation of Origin. Vine growers exert significant effort to protect their crops, given the economic losses this disease causes. Different studies have shown that using Gubler-Thomas Model (GTM) can reduce treatments by up to 20% compared to a full-time protection strategy. This reduction is achieved by optimizing applications based on temperature variations in late spring and summer when the disease’s conidial stage is active.

Sustainable management of grapevine trunk diseases

Grapevine trunk diseases (GTD) occur wherever grapes are grown and are considered the main biotic factor reducing yields and shortening vineyards’ lifespan. Currently, no product is available to eradicate GTD once grapevines are infected. Therefore, prophylactic strategies based on pruning wound protection and ‘remedial surgery’, the only eradication method based on the elimination of infected wood and renewal of the vine by means of new canes or suckers, are the only effective strategies available. The Canadian grape and wine industry focusses on a sustainable production and thus, looking for alternatives to chemicals for disease management is a top priority.