terclim by ICS banner
IVES 9 IVES Conference Series 9 Digitalization and valorization of the genotypic and phenotypic information retained within the FEM grapevine germplasm

Digitalization and valorization of the genotypic and phenotypic information retained within the FEM grapevine germplasm

Abstract

The maintenance and valorization of genetic diversity is an undoubtable resource for the viticulture of the future, since the climate crisis is forcing us to think of new, more resilient varieties. For this reason, the grapevine germplasm of the Fondazione Edmund Mach has been continuously expanded in the last decade to a total of 3,120 accessions, whose trueness-to-type has been verified by means of the universal set of nine microsatellites. About two thirds are V. vinifera subsp. vinifera accessions, while the rest consists of naturalized and selected hybrids, V. vinifera subsp. sylvestris, and pure species. The genetic material has also been characterized over three consecutive years for ampelographic, vine development, and biotic stress response traits to be exploited for experimental purposes. All the data and metadata have been digitalized and hosted in a SQL database, the FEMVitisDB, developed with an ontology driven paradigm to annotate the deposited information. The database was built following the MIAPPE checklist to ensure data FAIRness. A RESTful WebServiceAPI based on BrAPI and a web frontend were developed to easily explore the information in the repository.
Findings about the captured genetic diversity, the identified unique profiles, and the scouted unknown and therefore novel genotypes will be discussed. The latter enrich the genetic asset of the grapevine community, towards the feeding of international databases. Where feasible, the first degree of parentage relationship has been reconstructed. Finally, the outcomes regarding the inferred phenological core collections will be introduced to provide an information arsenal for future ’omics analyses.

DOI:

Publication date: June 14, 2024

Issue: Open GPB 2024

Type: Poster

Authors

Paola Bettinelli1*, Daniela Nicolini1, Giulia Betta1, Daniele Migliaro2, Laura Costantini1, Geovani Luciano de Oliveira3, Silvano Clementi1, Luca Zulini1, Paolo Fontana1, Luca Bianco1, Marco Stefanini1, Diego Micheletti, Silvia Vezzulli

1 Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige (Trento), Italy
2 CREA – Research Centre for Viticulture and Enology, Conegliano (Treviso), Italy
3 Molecular Biology and Genetic Engineering Center (CBMEG), Universidade Estadual de Campinas (UNICAMP), Campinas, Brazil

§ equally contributed

Contact the author*

Keywords

Database, collection, breeding, kinship, Vitis

Tags

IVES Conference Series | Open GPB | Open GPB 2024

Citation

Related articles…

Shifting wine consumption trends (2019-2024): market dynamics, sustainability, and consumer preferences

This study examined the evolution of wine consumption trends from 2019 to 2024, analyzing market dynamics, sustainability preferences, and generational shifts in consumer behavior.

The development of a simple electrochemical method based on molecularly imprinted polymers for the selective determination of caffeic acid in wine

Caffeic acid (CA) is an antioxidant of great importance in the food sector, such as wine, where it acts as a marker of wine ageing, as well as in the health sector due to its antioxidant properties and beneficial effects including the prevention of inflammation, cancer, neurodegenerative diseases, and diabetes.

Producer organisations at the service of the favourable chain of values to winegrowers and winemakers: the example of France

French law and European Union law recognise the existence of interprofessional organisations that bring together all the links in the wine industry.

Le zonage viticole en Italie. État actuel et perspectives futures

Over the past few decades, viticultural research has made numerous contributions which have made it possible to better understand the behavior of the vine as well as its response to the conditions imposed on it by the environment and agronomic practices. However, these results have only rarely been used in the practical management of vineyards because the research has been carried out using partial experimental models where reality is only represented by a few factors which are sometimes even made more complex by the introduction of elements foreign to the existing situation and difficult to apply to production (varieties, methods of cultivation, management techniques, etc.). To these reasons, one could add a low popularization of the results obtained, as well as the difficulty of implementing the scientific contributions, which does not allow the different production systems to fully express their potential. This limit of viticultural research can only be exceeded by the design of integrated projects designed directly on and for the territory. Indeed, only the integrated evaluation of a viticultural agro-system, which can be achieved through zoning, makes it possible to measure, or even attribute to each element of the system, the weight it exerts on the quality of the wine.

Characterized one of the largest collections of grapevine rootstocks (non-vinifera)

Microsatellite markers are a valuable tool to facilitate the management of germplasm collections and assess genetic diversity. This study reports the genetic characterization of a large collection of 379 rootstocks and other non-viniferaaccessions maintained at the University of Milan, Italy.