Metabolomic study of mixed Saccharomyces cerevisiae yeast during fermentation

Grapevine trunk diseases (GTD) occur wherever grapes are grown and are considered the main biotic factor reducing yields and shortening vineyards’ lifespan. Currently, no product is available to eradicate GTD once grapevines are infected. Therefore, prophylactic strategies based on pruning wound protection and ‘remedial surgery’, the only eradication method based on the elimination of infected wood and renewal of the vine by means of new canes or suckers, are the only effective strategies available. The Canadian grape and wine industry focusses on a sustainable production and thus, looking for alternatives to chemicals for disease management is a top priority.

The definition of terroir has evolved throughout history, from something clearly negative in the XVIth-XVIIIth century to a complex multi-parametric construct with positive connotations but also with many scientific unknowns. Terroir has always been linked more or less explicitly to the sensory properties of the resulting products.

Winegrape cultivars are particularly sensitive to temperature and recent changes in climate have advanced the onset of berry ripening, resulting in unbalanced fruit composition at harvest.

Developments in high-throughput sequencing (HTS) technologies allow us to obtain large amounts of microbial information from wine and must samples. Thus approaches, that are aimed at characterising the microbial diversity during fermentation, can be enhanced, or possibly even replaced, with HTS-based metabarcoding. To reduce experimental biases and increase data reproducibility, we compared 3 DNA extraction methods by evaluating differences in the fungal diversity with Riesling alcoholic fermentation samples at four different vineyards. The fungal diversity profiling was done using the genetic markers ITS2 and D2 using metabarcoding. The extraction methods compared consisted of a commercial kit, a recently published protocol that includes a DNA enhancer, and a protocol based on a buffer containing common inhibitor removal reagents. All methods were able to distinguish vineyard effects on the fungal diversity, but the results differed quantitatively.

Vineyard nutrient management is crucial for reaching production-specific quality standards, yet timely evaluation of nutrient status remains challenging. The existing sampling protocol of collecting vine tissue (leaves and/or petioles) at bloom or veraison is time-consuming. Additionally, this sampling practice is too late for in-season fertilizer applications (e.g. N is applied well before bloom). Therefore alternative early-season protocols are necessary to predict the vine nutrient demand for the upcoming season. The main goals of this project are to 1) optimize existing tissue sampling protocols; 2) determine the amount of nutrients removed at the end of the growing season.