terclim by ICS banner
IVES 9 IVES Conference Series 9 International Congress on Grapevine and Wine Sciences 9 2ICGWS-2023 9 Effect of drought on grapevine wood fungal pathogen communities using a metatranscriptomics approach

Effect of drought on grapevine wood fungal pathogen communities using a metatranscriptomics approach

Abstract

Crops are facing increasing biotic and abiotic stress pressures due to global changes. However, trade-off mechanisms between these stresses and the underlying physiological processes are still poorly understood, especially in perennial crop species. To better understand these trade-offs, we studied the effect of drought on grapevine (Vitis vinifera) physiology and esca-related wood fungal communities. Esca is a vascular disease caused by a community of wood-infecting pathogenic fungi, and characterized by trunk necrosis, leaf scorch symptoms, yield losses, and mortality. This grapevine disease lead to xylem hydraulic failure and leaf symptoms are inhibited by severe drought. To characterize the molecular processes underlying the interactions between drought and esca, we conducted two experiments on 30-year-old Sauvignon blanc vines, expressing or not esca leaf symptoms, and subjected or not to drought stress under controlled conditions. Sapwood samples from the trunks were used to perform community-level transcriptomics analyses. Results will be also analyzed in the light of others metabolomics and ecophysiological data acquired on wood and leaf samples. Such an integrative approach will provide new insights into the understanding of grapevine/esca pathosystem under drought conditions, in terms of physiological and functional responses in either host and pathogens.

Acknowledgements: The authors thanks Université de Bordeaux for funding the GPR (Great Research Project) Bordeaux Plant Science.

DOI:

Publication date: October 6, 2023

Issue: ICGWS 2023

Type: Poster

Authors

Marie Chambard1,2, Ninon Dell’Acqua1, Giovanni Bortolami1, Dario Cantù3, Nathalie Ferrer1, Gregory A. Gambetta4, Marie Foulongne-Oriol2, Chloé E. L. Delmas1

1 INRAE Bordeaux Nouvelle Aquitaine, UMR 1065 SAVE, 71 avenue Edouard Bourlaux – CS 20032, 33882 Villenave d’Ornon cedex
2 INRAE Bordeaux Nouvelle Aquitaine, UR 1264 MycSA, 71 avenue Edouard Bourlaux – CS 20032, 33882 Villenave d’Ornon cedex

3 Department of Viticulture and Enology, University of California, Davis, One Shields Ave, Davis, CA 95618, USA
4 INRAE Bordeaux Nouvelle Aquitaine, UMR 1287 EGFV, 71 avenue Edouard Bourlaux – CS 20032, 33882 Villenave d’Ornon cedex

Contact the author*

Keywords

Vitis vinifera Sauvignon Blanc, esca disease, drought, metatranscriptomics, physiology

Tags

2ICGWS | ICGWS | ICGWS 2023 | IVES Conference Series

Citation

Related articles…

Viticultural heritage in mountain territories of Catalonia: prospecting in the region of Osona, northern Spain

The recovery of ancestral or minority vine varieties has been gaining great interest in recent years, among other reasons because it is likely that some of these varieties, due to the fact that they are found in relict areas, have a greater potential for adaptation to external factors (biotic or abiotic) and can minimize the effects that climate change is causing in viticulture. Varieties that can be grown at altitude are currently being sought to combat rising temperatures and prolonged extreme drought conditions. In Catalonia, the Pyrenean expansion of vineyard cultivation is documented from the 10th century and has been related to the “small climatic optimum” (9th-12th centuries) and also to seigniorial power.[1] But different adverse climatic periods and the arrival of Phylloxera by the late 19th century made many of these crops disappear.[2]

Cumulative effect of deficit irrigation and salinity on vine responses

Climate change is increasing water needs in most of the wine growing regions while reducing the availability and quality of water resources for irrigation. In this context, the sustainability of Mediterranean viticulture depends on grapevine responses to the combinations of water and salt stress. With this aim, this work studies the effects of deficit irrigation and salinity on the physiology of the Tempranillo cultivar (Vitis vinifera L.) grafted onto a drought and salinity tolerant rootstock (1103 Paulsen).

Decoupling the effects of water and heat stress on Sauvignon blanc berries

Climate changes have important consequences in viticulture, heat waves accompanied by periods of drought are encountered more and more frequently. This study aims to evaluate the single and combined effect of water deficit and high temperatures on the thiol precursors biosynthesis in Sauvignon blanc grapes. For this purpose, a protocol has been developed for the cultivation of berries on a solid substrate. The berries, collected at three different times starting from veraison and grown in vitro, were subjected to 4 different treatments: control (C), water stress (WS), heat stress (HS), combined water and heat stress (WSHS). Water stress was simulated by adding abscisic acid to the culture medium, while different temperatures, respectively 25°C and 35°C, were managed with two illuminated climatic chambers.

Differential gene expression and novel gene models in 110 Richter uncovered through RNA Sequencing of roots under stress

The appearance of the Phylloxera pest in the 19th century in Europe caused dramatical damages in grapevine diversity. To mitigate these losses, grapevine growers resorted to using crosses of different Vitis species, such as 110 Richter (110R) (V. berlandieri x V. rupestris), which has been invaluable for studying adaptations to stress responses in vineyards. Recently, a high quality chromosome scale assembly of 110R was released, but the available gene models were predicted without using as evidence transcriptional sequences obtained from roots, that are crucial organs in rootstock, and they may express certain genes exclusively. Therefore, we employed RNA sequencing reads of 110R roots under different stress conditions to predict new gene models in each haplotype of 110R under different stresses.

Anthocyanin content and composition of Merlot grapes under temperature and late pruning conditions 

One of the main aspects of Climate Change is the increase of temperatures during summer and grape maturity period. Physiological processes are influenced by these high temperatures and result in grapes with higher sugar concentration, less acidity and less anthocyanin content among other quality changes. One strategy to deal with the climate change effects is the implementation of late winter pruning to alter the effect of high temperatures during key periods by delays in maturity time.