Exploring high throughput secondary trait phenomics to improve grapevine breeding

Accurate monitoring of grapevine phenology is essential for vineyard management and for understanding seasonal responses to climate variability (Reis et al., 2020).

Modern viticulture faces a critical paradox. The widespread adoption of clonal selection in the mid-20th century successfully standardized production and reduced viral incidence through sanitization and certification, but unintentionally created a genetically simplified vineyard landscape.

The marked climate change impact on vine and grape development (phenology, sugar content, acidity …) is one of the manifestations of Genotype X Environment X Management interactions importance in viticulture. Some practices, such as irrigation, can mitigate the effect of water deficit on grape development, but warming is much more difficult to challenge. High temperatures tend to alter the acid balance of the fruit with a parallel increase in sugar concentration. In the long term, genetic improvement to select varieties better coping with temperature elevation appear as a good option to support sustainable viticulture. Nevertheless, the existing phenotypic diversity for grape quality components that are influenced by temperature is poorly understood, which jeopardizes breeding strategies.

Grapevine downy mildew is a disease of foliage caused by Oomycete Plasmopara viticola an endoparasite that develops inside grapevine organs and can infect virtually every green organ. Downy mildew is one of the most destructive diseases in wine-growing regions, drastically reducing yield and fruit quality. Traditional manual disease detection relies on farm experts. Human field scouting has been widely used for monitoring the disease progress, however, is costly, laborious, subjective, and often imprecise.

In the production of sparkling wines, during the second fermentation, mannoproteins are released by yeast autolysis, which affect the quality of the wines. The effect of mannoproteins has been extensively studied, and may affect aroma and foam quality. However, there are no studies on the effect of other polysaccharides such as those from grapes. Considering the large production of waste from the wine industry, it was proposed to obtain polysaccharide-rich extracts from some of these by-products[1].