terclim by ICS banner
IVES 9 IVES Conference Series 9 Exploring high throughput secondary trait phenomics to improve grapevine breeding

Exploring high throughput secondary trait phenomics to improve grapevine breeding

Abstract

Modern grapevine breeding programs have overcome many challenges using genomic selection, which has allowed breeders to make targeted selections at earlier stages in the breeding process. However, the cost of genetic testing may present a burden for some programs, and markers often struggle to accurately predict quantitative traits. Recent advances in high throughput, high-dimensional data have provoked investigation into the use of high-dimensional phenomics as a low-cost addition to the grape breeder’s toolkit that may offer advantages in predicting quantitative traits. High-dimensional secondary trait (HDST) data has been employed in annual crops for prediction of agriculturally important traits such as yield. To explore the potential of HDST data in grapes, 1618 grapevine seeds and seedlings from six populations were evaluated using hyperspectral and high-dimensional HSV color data.  We show that HDST data are variable within seed populations. To start, we explore correlations of HDST data with early life stage traits, demonstrating potential to develop predictive models. Our work utilizes low-cost, high throughput data which has the potential to supplement genomic selection, allowing breeders to make decisions at the earliest stage in the breeding cycle. This work lays a foundation for the use of HDST data from seeds to predict traits in grapevine.

DOI:

Publication date: June 14, 2024

Issue: Open GPB 2024

Type: Poster

Authors

Danielle Hopkins1*, Matthew Rubin2, Allison Miller1,2

1 Department of Biology, Saint Louis University, St. Louis, MO
2 Donald Danforth Plant Science Center, St. Louis, MO

Contact the author*

Keywords

phenomic selection, high throughput phenotyping, high-dimensional data

Tags

IVES Conference Series | Open GPB | Open GPB 2024

Citation

Related articles…

A applied viticultural zoning, based on the “secteurs de la reference” methodology, in the Cognac vineyard (France)

Dans les Charentes, en réponse à une crise de production du vignoble destiné à la production de Cognac, un plan de diversification viticole pour des vins de pays de qualité est mis en place. Il nécessite une connaissance des sols et de leurs caractéristiques viticoles pour orienter le choix des types de vins et adapter l’itinéraire technique de production.

Viticultural potential assessment and its spatial delineation analysis in Goriška Brda viticultural area

Viticultural potential has a complex conditioning, determined by relief,
soil, climate and lithology. Delineation of viticultural potential from vineyard areas is essential for the purpose to collect the necessary data for viticultural zoning. Using this data, we can achieve greater yield quality, which is the most important criteria in viticulture. The main purpose of this research is
characterizing of viticultural potential and zoning of homogeneous viticultural zones in Goriška Brda region by assessing the suitability of defined ecological factors.

Thermal risk assessment for viticulture using monthly temperature data

Temperature extremes affect grapevine physiology, as well as grape quality and production. In most grape growing regions, frost or heat wave events are rare and as such conducting a risk analysis using robust statistics makes the use of long term daily data necessary.

WINE AS AN EMOTIONAL AND AESTHETIC OBJECT: IMPACT OF EXPERTISE

Wine tasting has been shown to provide emotions to tasters (Coste et al. 2018). How will expertise impact this emotional response? Burnham and Skilleås (2012) reported that the cultural, experiential, and aesthetic competencies characterize an expert in wine compared to a novice. Although there is no consensual definition of an aesthetic experience, Burnham and Skilleås (2012) reported that aesthetic appreciation is “disinterested, normative for others and communicable” in comparison to sensory pleasure.

FACTORS AFFECTING QUERCETIN SOLUBILITY IN SANGIOVESE RED WINE: FIRST RESULTS

Quercetin (Q) is present in grape in form of glycosides and as aglycone. These compounds are extracted from grape skins during winemaking. In wines, following the hydrolysis reactions, the amount of quercetin aglycon can exceed its solubility value. Unfortunately, a threshold solubility concentration for quercetin in wine is not easy to determine because it depends on wine matrix (Gambuti et al., 2020).