Terroir 2020 banner
IVES 9 IVES Conference Series 9 Soil microbial and arthropod biodiversity under organic and biodynamic viticulture

Soil microbial and arthropod biodiversity under organic and biodynamic viticulture

Abstract

Aims: The aim of the study was to investigate whether organic or biodynamic management have a long-term impact on 1) the microbial biomass and enzymatic activity in the soil, 2) the soil microbial community, 3) flying as well as soil living arthropods and associated fungi.

Methods and Results: The studies presented here were conducted in a field trial comparing integrated, organic and biodynamic viticulture at least 10 years after the implementation of the different management systems. The vineyard is located in Geisenheim, Germany, and the study is conducted on Vitis vinifera L. cv. Riesling.

One study assessed soil enzymatic activities (GLU, CAT, UR, DHA, PHO) and microbial biomass by quantifying PLFAs and NLFAs, respectively. For the second study soil fungal and bacterial biodiversity were investigated using an amplicon sequencing approach. For the third study eDNA was extracted from arthropods in bulk and soil samples. A DNA metabarcoding approach was used to investigate whether diversity of arthropods and fungi in these samples was affected by the management system.

Fungal and bacterial biomass as well as enzymatic activities in the soil were shown to be highly affected by the management system. The organic and the biodynamic systems had significantly more fungal and bacterial biomass. In contrast, the integrated system had a significantly higher mycorrhizal biomass compared to the organic and the biodynamic system. Enzymatic activities measured were significantly higher under organic and biodynamic management.

Fungal species richness assessed by DNA sequencing did not differ among management systems, but fungal community composition was significantly affected. Bacterial species richness was significantly higher under organic and biodynamic management, whereas bacterial community composition was less affected by the management system.

Richness of flying and soil-living arthropods and their related fungi assessed by eDNA sequencing was not significantly affected by the management system alone. In contrast, management systems significantly differed in the arthropod community composition in bulk samples as well as in fungal community composition associated with flying as well as soil-living arthropods.

Conclusions:

Different management systems have a clear impact on soil microbial activity, biomass, and biodiversity, as well as on arthropod biodiversity and fungal biodiversity associated with arthropods. In the current studies soil enzymatic activities as well as soil microbial biomass and bacterial species richness in the soil were positively affected by organic and biodynamic management. Fungal community composition in the soil, in samples of soil-living as well as in samples of flying arthropods were highly affected by the management system. The hypothesis of whether arthropods in the vineyard act as vectors for bacteria and fungi will be discussed.

DOI:

Publication date: March 25, 2021

Issue: Terroir 2020

Type: Video

Authors

Johanna Döring1*, Matthias Friedel1, Jacob Agerbo Rasmussen3,4,5, Maximilian Hendgen2, Sofia Di Giacinto2, Randolf Kauer1

1Department of General and Organic Viticulture, Hochschule Geisenheim University, Von-Lade-Str. 1, D-65366 Geisenheim, Germany
2Department of Soil Science and Plant Nutrition, Hochschule Geisenheim University, Von-Lade-Str. 1, D-65366 Geisenheim, Germany
3Section for Evolutionary Genomics, The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Øster Farimagsgade 5A, 1352 Copenhagen, Denmark
4Biological Institute, Genome Research and Molecular Biomedicine, University of Copenhagen, Universitetsparken 13, 2200 Copenhagen, Denmark 
5Center for Evolutionary Hologenomics, University of Copenhagen, Øster Farimagsgade  5A,  1352 Copenhagen, Denmark

Contact the author

Keywords

Organic, biodynamic, soil microbial activity, soil microbial biomass, microbial biodiversity, arthropod biodiversity

Tags

IVES Conference Series | Terroir 2020

Citation

Related articles…

Teasing apart terroir: the influence of management style on native yeast communities within Oregon wineries and vineyards

Newer sequencing technologies have allowed for the addition of microbes to the story of terroir. The same environmental factors that influence the phenotypic expression of a crop also shape the composition of the microbial communities found on that crop. For fermented goods, such as wine, that microbial community ultimately influences the organoleptic properties of the final product that is delivered to customers. Recent studies have begun to study the biogeography of wine-associated microbes within different growing regions, finding that communities are distinct across landscapes. Despite this new knowledge, there are still many questions about what factors drive these differences. Our goal was to quantify differences in yeast communities due to management style between seven pairs of conventional and biodynamic vineyards (14 in total) throughout Oregon, USA. We wanted to answer the following questions: 1) are yeast communities distinct between biodynamic vineyards and conventional vineyards? 2) are these differences consistent across a large geographic region? 3) can differences in yeast communities be tied to differences in metabolite profiles of the bottled wine? To collect our data we took soil, bark, leaf, and grape samples from within each vineyard from five different vines of pinot noir. We also collected must and a 10º brix sample from each winery. Using these samples, we performed 18S amplicon sequencing to identify the yeast present. We then used metabolomics to characterize the organoleptic compounds present in the bottled wine from the blocks the year that we sampled. We are actively in the process of analysing our data from this study.

Influence of climatic conditions on grape composition of Tempranillo in La Mancha DO (Spain)

The aim of this work was to analyze the variability in grape composition of the Tempranillo cultivar related to climatic conditions, in La Mancha Designation of Origin. Grape composition (sugar content, total acidity, pH, malic acid, and total and extractable anthocyanins) recorded during ripening, were analysed for the period 2000-2019. The weather conditions at daily time scale, recorded during the same period, were also evaluated. The relationships between grape parameters with climatic variables related to temperature and to water deficits, referring different periods between phenological events along the growing cycle, were evaluated using regression analysis. High variability in grape composition was observed in the period analysed. Total acidity varied between 3.7 and 7.3 gL-1 while malic acid varied between 1.2 and 4 gL-1. The extractable anthocyanins ranged between 526 and 972 mgL-1, and total anthocyanins ranged between 922 and 1388 mgL-1, being the lowest values recorded in the hottest year (2017). Total acidity decreased 0.77 gL-1 for an increase of 100 GDD, while malic acid decrease in 0.42 gL-1 for the same GDD increase, being the period between veraison and harvest the one that seemed to have higher influence on acidity. In addition, it was confirmed that increasing water deficits decreased acidity. Total and extractable anthocyanins increased in about 210 and 105 mgL-1, respectively, with an increase of 100 GDD from veraison to harvest, and the increase in water deficits favour the increase of anthocyanins, both total and extractable anthocyanins. Total and extractable anthocyanins concentration increased in 35 and 22 mgL-1 per an increase of 10 mm in the water deficit. These results can be of interest to understand the potential changes that grapes composition may suffer under future warmer climates.

Different soil types and relief influence the quality of Merlot grapes in a relatively small area in the Vipava Valley (Slovenia) in relation to the vine water status

Besides location and microclimatic conditions, soil plays an important role in the quality of grapes and wine. Soil properties influence…

Variations of soil attributes in vineyards influence their reflectance spectra

Knowledge on the reflectance spectrum of soil is potentially useful since it carries information on soil chemical composition that can be used to the planning of agricultural practices. If compared with analytical methods such as conventional chemical analysis, reflectance measurement provides non-destructive, economic, near real-time data. This paper reports results from reflectance measurements performed by spectroradiometry on soils from two vineyards in south Brazil. The vineyards are close to each other, are on different geological formations, but were subjected to the same management. The objective was to detect spectral differences between the two areas, correlating these differences to variations in their chemical composition, to assess the technique’s potential to predict soil attributes from reflectance data.To that end, soil samples were collected from ten selected vine parcels. Chemical analysis yield data on concentration of twenty-one soil attributes, and spectroradiometry was performed on samples. Chemical differences significant to a 95% confidence level between the two studied areas were found for six soil attributes, and the average reflectance spectra were separated by this same level along most of the observed spectral domain. Correlations between soil reflectance and concentrations of soil attributes were looked for, and for ten soil traits it was possible to define wavelength domains were reflectance and concentrations are correlated to confidence levels from 95% to 99%. Partial Least Squares Regression (PLSR) analyses were performed comparing measured and predicted concentrations, and for fifteen out of 21 soil traits we found Pearson correlation coefficients r > 0.8. These preliminary results, which have to be validated, suggest that variations of concentration in the investigated soil attributes induce differences in reflectance that can be detected by spectroradiometry. Applications of these observations include the assessment of the chemical content of soils by spectroradiometry as a fast, low-cost alternative to chemical analytical methods.

Ecophysiological performance of Vitis rootstocks under water stress

The use of rootstocks tolerant to soil water deficit is an interesting strategy to cope with limited water availability. Currently, several nurseries are breeding new genotypes, but the physiological basis of its responses under water stress are largely unknown. To this end, an ecophysiological assessment of the conventional 110-Richter (110R) and SO4, and the new M1 and M4 rootstocks was carried out in potted ungrafted plants. During one season, these Vitis genotypes were grown under greenhouse conditions and subjected to two water regimes, well-watered and water deficit. Water potentials of plants under water deficit down to < -1.4 MPa, and net photosynthesis (AN) <5 μmol m-2 s-1 did not cause leaf oxidative stress damage compared to well-watered conditions in any of the genotypes. The antioxidant capacity was sufficient to neutralize the mild oxidative stress suffered. Under both treatments, gravimetric differences in daily water use were observed among genotypes, leading to differences in the biomass of root, shoot and leaf. Under well-watered conditions, SO4 and 110R were the most vigorous and M1 and M4 the least. However, under water stress, SO4 exhibited the greatest reduction in biomass while M4 showed the lowest. Remarkably, under these conditions, SO4 reached the least negative stem water potential (Ψstem), while M1 reduced stomatal conductance (gs) and AN the most. In addition, SO4 and M1 genotypes also showed the highest and lowest hydraulic conductance values, respectively. Our results suggest that there are differences in water use regulation among genotypes, not only attributed to differences in stomatal regulation or intrinsic water use efficiency at the leaf level. Therefore, because no differences in canopy-to-root ratio were achieved, it is hypothesized that xylem vessel anatomical differences may be driving the reported differences among rootstocks performance. Results demonstrate that each Vitis rootstock differs in its ecophysiological responses under water stress.