GiESCO 2019 banner
IVES 9 IVES Conference Series 9 GiESCO 9 GiESCO 2019 9 Modeling from functioning of a grape berry to the whole plant

Modeling from functioning of a grape berry to the whole plant

Abstract

Context and purpose of the study – Grape quality is a complex trait that mainly refers to berry chemical composition, including sugars, organic acids, phenolics, aroma and aroma precursor compounds. It is known that the composition and concentration of chemical compounds dynamically change along berry development and can be affected by genotypes (rootstock and scion), environment (light, temperature and water) and nutrient status (carbon and nitrogen). Moreover, the ongoing climate change is affecting the physiology of grapevine and ultimately wine quality and typicity. Therefore, a better understanding of the mechanisms controlling the accumulation of quality‐related metabolites (both primary and secondary) in grape berry is essential to choose grapevine cultivars and viticultural practices best adapted to a given growth region. Process‐based models can mechanistically integrate various processes involved in fruit growth and composition, and simulate the plant responses to weather and management practices, making them a promising tool to study the response of berry quality to those factors.

Material and methods – Three types of modeling approaches have been applied, including constraint‐ based flux balance analysis, process‐based models, and 3D structure‐functional models. These models were established, calibrated and validated based extensive experimental measurements in grapevines growing under contrast conditions, e.g. nitrogen limitation, modulation of leaf‐to‐fruit ratios, and light conditions. Fruit growth was measured in parallel with metabolite composition, enzyme activities, and whole plant growth processes, such as canopy photosynthesis, and transpiration. Moreover, in silico analysis was conducted to create virtual genotypes or to assess regulatory roles of model parameters.

Results– At cellular scale, we used constraint‐based flux balance analysis model to investigate the flux modifications responsible for biosynthesis of anthocyanins in response to nitrogen limitation. At organ scale, we developed process‐based models for sugar accumulation and anthocyanin composition in grape berries, which allowed us to determine the key processes responsible for these two important quality components. At the whole‐plant scale, a 3D structure‐functional model was developed to simulate water transport, leaf gas exchanges, carbon allocation, and berry growth in various genotype x environment scenarios. In the future, the interactions among the different scales of regulation will be further modelled to offer a model toolkit that allows more accurate predictions of grapevine growth and berry quality elaboration under changing environments and paving a way towards model‐assisted breeding. 

DOI:

Publication date: June 19, 2020

Issue: GiESCO 2019

Type: Article

Authors

Zhanwu DAI (1), Jinliang CHEN (1), Junqi ZHU (2), Michel GENARD (3), Bertrand BEAUVOIT (4), Stefano PONI (5), Sophie COLOMBIE (4), Gregory GAMBETTA (1), Philippe VIVIN (1), Nathalie OLLAT (1), Serge DELROT (1), Yves GIBON (4), Eric GOMES (1)

(1) EGFV, Bordeaux Sci Agro, INRA, Univ. Bordeaux, F-33882 Villenave d’Ornon, France.
(2) The New Zealand Institute for Plant & Food Research Limited (PFR) Marlborough, Blenheim 7240, New Zealand.
(3) INRA, UR 1115 Plantes et Systèmes de Culture Horticoles, Avignon, France.
(4) INRA, UMR 1332 Biologie du Fruit et Pathologie, F33883 Villenave d’Ornon, France.
(5) Department of Sustainable Crop Production, Università Cattolica del Sacro Cuore, Via Emilia Parmense 84, 29122 Piacenza, Italy.

Contact the author

Keywords

Environmental adaptation, Vitis vinifera, berry quality, modeling

Tags

GiESCO 2019 | IVES Conference Series

Citation

Related articles…

Elucidating vineyard site contributions to key sensory molecules: Identification of correlations between elemental composition and volatile aroma profile of site-specific Pinot noir wines

The reproducibility of elemental profile in wines produced across multiple vintages has been previously reported using grapes from a single scion clone of Vitis vinifera L. cv. Pinot noir. The grapevines were grown on fourteen different vineyard sites, from Oregon to southern California in the U.S.A., which span distances from approximately hundreds of meters to 1450 km, while elevations range from near sea level to nearly 500 m. In addition, sensorial (i.e. aroma, taste, and mouthfeel) and chemical (i.e. polyphenolic and volatile) differences across the different vineyard sites have also been observed among these wines at two aging time points. While strong evidence exists to support that grapes grown in different regions can produce wines with unique chemical and sensorial profiles, even when a single clone is used, the understanding of growing site characteristics that result in this reproducible differentiation continues to emerge. One hypothesis is that the elemental profile that a vineyard site imparts to the grape berries and the resulting wine is an important contributor to this differentiation in chemistry and sensory of wines. For example, various classes of enzymes that catalyze the formation of key aroma compounds or their precursors require specific metals. In this work, we begin to report correlations between elemental and volatile aroma profiles of site-specific Pinot noir wines, made under standardized winemaking conditions, that have been previously shown to be distinguished separately by these chemical analyses.

Exploring relationships among grapevine chemical and physiological parameters and mycobiome composition under drought stress

Improving our knowledge on biotic and abiotic factors that influence the composition of the grapevine mycobiome is of great agricultural significance, due to potential effects on plant health, productivity, and wine characteristics. Among the various environmental factors affecting the morphological, physiological, biochemical and molecular attributes of grapevine, drought stress is one of the most severe, becoming increasingly an issue worldwide.

Acumulación de materia seca, orientada a valorar la fijación de carbono, en función del aporte de riego y la pluviometría, en Cabernet-Sauvignon a lo largo de 15 años

The vineyard is capable of fixing carbon in its permanent structure from atmospheric carbon dioxide, through the process of gas exchange and the performance of photosynthesis. The photosynthetic capacity of the vineyard depends on the water resources that the plant may have at its disposal, so the amount of dry matter, derived from the processed photosynthates, that it can store will depend on the water regime of the crop, both in the annually renewable organs as in permanent parts.

Assessment of wine non-Saccharomyces yeast strains as promising producers of glutathione

AIM: Glutathione (GSH) is a non-protein thiol naturally present in grape berries and produced by yeasts during fermentation. It has a strong antioxidant activity, thus can be added during winemaking to limit the oxidative phenomena of wine, preserving sensory characteristics and stability, ultimately promoting a healthier product by reducing the need for SO2 addition.

Soil management of interrow spacing as an important factor to protect the vineyard soils from runoff and erosion under the Mediterranean climate

Nearly one third of the Herault vineyard (south of France) is planted on soils very sensitive to water runoff and erosion