terclim by ICS banner
IVES 9 IVES Conference Series 9 International Congress on Grapevine and Wine Sciences 9 2ICGWS-2023 9 INTEGRAPE guidelines and tools: an effort of COST Action CA17111

INTEGRAPE guidelines and tools: an effort of COST Action CA17111

Abstract

INTEGRAPE was a European interdisciplinary network for “data integration to maximize the power of omics for grapevine improvement” (CA17111, https://integrape.eu/), funded by the European COST Association from September 2018 to 2022. This Action successfully developed guidelines and tools for data management and promoted the best practices in grapevine omics studies with a holistic future vision of: “Imagine having all data on grapevine accessible in a single place”. This is the actual goal of its current spin-off GRAPEDIA (The Grape Genomics Encyclopedia; IG17111, https://grapedia.org/). By adhering to the F.A.I.R. (Findable, Accessible, Interoperable, and Reusable) principles, INTEGRAPE began its activities by focusing on data and metadata descriptions (i.e., for experiments), and has provided guidelines on plant phenotyping, including a standard vocabulary for grapevine ontology anatomy and developmental stages; it has delivered recommendations on transcriptomics and metabolomics data acquisition, data analysis, and data sharing into public repositories [1] and it has offered a new reference genome assembly[2], genome browser tools and up-to-date gene functional annotation[3]. Lastly, the network has been advanced in transcriptomics and metabolomics data integration by developing a user-friendly tool[4], available on the Vitis Visualization (VitViz) platform (https://tomsbiolab.com/vitviz).

Acknowledgments: We would like to acknowledge all the researchers from several countries who altogether dedicated time, effort, and knowledge to the success of this Cost Action.

References:

1)  Savoi et al. (2021) Grapevine and wine metabolomics-based guidelines for FAIR data and metadata management. Metabolites 11, 757, DOI 10.3390/metabo11110757

2)  Velt et al. (2023). An improved reference of the grapevine genome reasserts the origin of the PN40024 highly homozygous genotype. G3 Genes|Genomes|Genetics, DOI 10.1093/g3journal/jkad067

3)  Navarro-Payá et al. (2022) The grape gene reference catalogue as a standard resource for gene selection and genetic improvement. Frontiers in Plant Science 12:803977 DOI 10.3389/fpls.2021.803977

4)  Savoi et al. (2022) Transcriptomic and metabolomic integration as a resource in grapevine to study fruit metabolite quality traits. Frontiers in Plant Science 13:937927, DOI 10.3389/fpls.2022.937927

DOI:

Publication date: October 6, 2023

Issue: ICGWS 2023

Type: Poster

Authors

Stefania Savoi1*, Panagiotis Arapitsas2, Anne-Marie Digby3, Fulvio Mattivi2, José Tomas Matus4

1 Department of Agricultural, Forest and Food Sciences, University of Turin, Italy
2 Department of Food Quality and Nutrition, Edmund Mach Foundation, Research and Innovation Centre, San Michele all’Adige, Italy
3 Department of Biotechnology, University of Verona, Italy
4 Institute for Integrative Systems Biology (I2SysBio), Universitat de València-CSIC, Paterna, Spain

Contact the author*

Keywords

data accessibility, data standardization, data sharing, community, grapevine

Tags

2ICGWS | ICGWS | ICGWS 2023 | IVES Conference Series

Citation

Related articles…

Correlative study between degradation of rosé wine under accelerated conditions and under normal conditions

Several studies have tried to develop different methods to study the photodegradation of wine in an accelerated way, trying to elucidate the effect of light on the wine compounds[1]. In a previous study, our team developed a chamber that speeds up the photodegradation of rosé wine[2]. In the present work we have tried to establish a correlation between irradiation times in accelerated conditions and the natural exposure to the cycles of light that usually exist in markets or at home.

The use of plasma activated water in barrel disinfection: impact on oak wood composition

The use of barrels is a practice that improves the quality of wines. The porous structure of wood favors the accumulation of microorganisms that can deteriorate the quality of wines so that barrel cleaning and sanitizing treatments are essential. The burning of sulphur discs has been the most common practice in winemaking because ots biocide effect. Nevertheless, its effectiveness is still insufficient and it is harmful for human health.

Volatile composition of Cabernet Sauvignon wines from Argentina, Portugal and Spain

Cabernet Sauvignon is one of the most cultivated grape varieties worldwide being grown in different environmental conditions due to its excellent adaptability. Volatile compounds deeply contribute to the sensory properties of wines therefore to wine quality. The aim of this work was to compare the aroma profile of Cabernet Sauvignon wines from different geographical areas and climatic conditions, namely from Argentina, Portugal and Spain, from the vintage 2022. In addition, the volatile composition of the Cabernet Sauvignon Portuguese wines from three vintages was evaluated.

Model-assisted analysis of the root traits underlying RSA genotypic diversity in Vitis: a promising approach for rootstock selection?

By dissecting the root system architecture (RSA) into its underpinning components (e.g. root emission, axial growth, radial growth, branching, root direction or tropism) and identifying the relationships between them, functional-structural 3D root models are promising tools for analyzing the diversity and complexity of root system phenotypes with Genotype × Environment interactions. The model parameters are assumed to be synthetic traits, less influenced by the environment, and consequently with less polygenic architectures than the integrative RSA traits they drive. Root models can serve as a basis for in silico development of root system ideotypes by highlighting the developmental processes and parameters that most likely influence RSA fitness.

Wine racking in the winery and the use of inerting gases

The O2 uptake in the different winemaking processes is generally considered to be negative for the sensory characteristics of white and rosé wines. Wine racking is a critical point of O2 uptake, as the large surface area of the wine exposed during this operation and the inability to maintain an effective inert gas blanket over it.
The objective was to study O2 uptake during the racking of a model wine without using inert gases and to compare it with the purging of the destination tank with different inert gases.