terclim by ICS banner
IVES 9 IVES Conference Series 9 International Congress on Grapevine and Wine Sciences 9 2ICGWS-2023 9 INTEGRAPE guidelines and tools: an effort of COST Action CA17111

INTEGRAPE guidelines and tools: an effort of COST Action CA17111

Abstract

INTEGRAPE was a European interdisciplinary network for “data integration to maximize the power of omics for grapevine improvement” (CA17111, https://integrape.eu/), funded by the European COST Association from September 2018 to 2022. This Action successfully developed guidelines and tools for data management and promoted the best practices in grapevine omics studies with a holistic future vision of: “Imagine having all data on grapevine accessible in a single place”. This is the actual goal of its current spin-off GRAPEDIA (The Grape Genomics Encyclopedia; IG17111, https://grapedia.org/). By adhering to the F.A.I.R. (Findable, Accessible, Interoperable, and Reusable) principles, INTEGRAPE began its activities by focusing on data and metadata descriptions (i.e., for experiments), and has provided guidelines on plant phenotyping, including a standard vocabulary for grapevine ontology anatomy and developmental stages; it has delivered recommendations on transcriptomics and metabolomics data acquisition, data analysis, and data sharing into public repositories [1] and it has offered a new reference genome assembly[2], genome browser tools and up-to-date gene functional annotation[3]. Lastly, the network has been advanced in transcriptomics and metabolomics data integration by developing a user-friendly tool[4], available on the Vitis Visualization (VitViz) platform (https://tomsbiolab.com/vitviz).

Acknowledgments: We would like to acknowledge all the researchers from several countries who altogether dedicated time, effort, and knowledge to the success of this Cost Action.

References:

1)  Savoi et al. (2021) Grapevine and wine metabolomics-based guidelines for FAIR data and metadata management. Metabolites 11, 757, DOI 10.3390/metabo11110757

2)  Velt et al. (2023). An improved reference of the grapevine genome reasserts the origin of the PN40024 highly homozygous genotype. G3 Genes|Genomes|Genetics, DOI 10.1093/g3journal/jkad067

3)  Navarro-Payá et al. (2022) The grape gene reference catalogue as a standard resource for gene selection and genetic improvement. Frontiers in Plant Science 12:803977 DOI 10.3389/fpls.2021.803977

4)  Savoi et al. (2022) Transcriptomic and metabolomic integration as a resource in grapevine to study fruit metabolite quality traits. Frontiers in Plant Science 13:937927, DOI 10.3389/fpls.2022.937927

DOI:

Publication date: October 6, 2023

Issue: ICGWS 2023

Type: Poster

Authors

Stefania Savoi1*, Panagiotis Arapitsas2, Anne-Marie Digby3, Fulvio Mattivi2, José Tomas Matus4

1 Department of Agricultural, Forest and Food Sciences, University of Turin, Italy
2 Department of Food Quality and Nutrition, Edmund Mach Foundation, Research and Innovation Centre, San Michele all’Adige, Italy
3 Department of Biotechnology, University of Verona, Italy
4 Institute for Integrative Systems Biology (I2SysBio), Universitat de València-CSIC, Paterna, Spain

Contact the author*

Keywords

data accessibility, data standardization, data sharing, community, grapevine

Tags

2ICGWS | ICGWS | ICGWS 2023 | IVES Conference Series

Citation

Related articles…

Optimization of the acquisition of NIR spectrum in grape must and wine 

The characterization of chemical compounds related with quality of grape must and wine is relevant for the viticulture and enology fields. Analytical methods used for these analyses require expensive instrumentation as well as a long sample preparation processes and the use of chemical solvents. On the other hand, near-infrared (NIR) spectroscopy technique is a simple, fast and non-destructive method for the detection of chemical composition showing a fingerprint of the sample. It has been reported the potential of NIR spectroscopy to measure some enological parameters such as alcohol content, pH, organic acids, glycerol, reducing sugars and phenolic compounds.

Identification of loci associated with specialised metabolites in Vitis vinifera

Secondary (or specialised) metabolites such as terpenes and phenolic compounds are produced by plants for various roles which include defence against pathogens and herbivores, protection against abiotic stress, and plant signalling. Additionally, these metabolites influence grapevine quality traits such as colour, aroma, taste, and nutritional value. However, the biosynthesis of these metabolites is often complex and controlled by multiple genes which in grapevine are predominantly uncharacterised.

Prediction of aromatic attributes of red wines from its colour properties 

Wine perception is a multisensory experience that makes use of the sight, smell, and taste senses. When wine is sensorially assessed, the stimulus received generates multiple signals that tasters convert into organoleptic descriptors. Colour is commonly the first attribute evaluated during wine tasting. Moreover, the colour properties provide the taster with a priori information of the wine’s aroma. This preconceived perception is later confirmed or denied during the aroma evaluation.

Bioprotection of grape must by Metschnikowia sp.: genericity and mechanism

The market trend heads to food products with less chemical inputs, including in oenology. During the winemaking process, sulfites are commonly use to avoid microbiological contamination and stabilization of the wine thanks to its antimicrobial and antioxidant activities. Nevertheless, this use is not without consequences on human health and environment, leading for example to allergic reaction and pollution. A biological alternative to these sulfites has emerges: the bioprotection.

New varieties descendant from Monastrell with lower sugar and high phenolic content adapted to warm climates

Given that climate change is a continuous process, it is necessary to constantly search for new strategies that help the viticulturist sector to mitigate its consequences. All adaptation strategies will have a greater or lesser effect that in turn will be marked by the times of action. As a long-term action, a genetic breeding program to obtain new varieties descendant from Monastrell has been developed in the Region of Murcia (more specifically, in the IMIDA Research Center) since 1997. In this program, new red varieties have been developed through directed crosses of the Monastrell variety with other varieties such as Cabernet Sauvignon, Tempranillo and Syrah.