terclim by ICS banner
IVES 9 IVES Conference Series 9 International Congress on Grapevine and Wine Sciences 9 2ICGWS-2023 9 INTEGRAPE guidelines and tools: an effort of COST Action CA17111

INTEGRAPE guidelines and tools: an effort of COST Action CA17111

Abstract

INTEGRAPE was a European interdisciplinary network for “data integration to maximize the power of omics for grapevine improvement” (CA17111, https://integrape.eu/), funded by the European COST Association from September 2018 to 2022. This Action successfully developed guidelines and tools for data management and promoted the best practices in grapevine omics studies with a holistic future vision of: “Imagine having all data on grapevine accessible in a single place”. This is the actual goal of its current spin-off GRAPEDIA (The Grape Genomics Encyclopedia; IG17111, https://grapedia.org/). By adhering to the F.A.I.R. (Findable, Accessible, Interoperable, and Reusable) principles, INTEGRAPE began its activities by focusing on data and metadata descriptions (i.e., for experiments), and has provided guidelines on plant phenotyping, including a standard vocabulary for grapevine ontology anatomy and developmental stages; it has delivered recommendations on transcriptomics and metabolomics data acquisition, data analysis, and data sharing into public repositories [1] and it has offered a new reference genome assembly[2], genome browser tools and up-to-date gene functional annotation[3]. Lastly, the network has been advanced in transcriptomics and metabolomics data integration by developing a user-friendly tool[4], available on the Vitis Visualization (VitViz) platform (https://tomsbiolab.com/vitviz).

Acknowledgments: We would like to acknowledge all the researchers from several countries who altogether dedicated time, effort, and knowledge to the success of this Cost Action.

References:

1)  Savoi et al. (2021) Grapevine and wine metabolomics-based guidelines for FAIR data and metadata management. Metabolites 11, 757, DOI 10.3390/metabo11110757

2)  Velt et al. (2023). An improved reference of the grapevine genome reasserts the origin of the PN40024 highly homozygous genotype. G3 Genes|Genomes|Genetics, DOI 10.1093/g3journal/jkad067

3)  Navarro-Payá et al. (2022) The grape gene reference catalogue as a standard resource for gene selection and genetic improvement. Frontiers in Plant Science 12:803977 DOI 10.3389/fpls.2021.803977

4)  Savoi et al. (2022) Transcriptomic and metabolomic integration as a resource in grapevine to study fruit metabolite quality traits. Frontiers in Plant Science 13:937927, DOI 10.3389/fpls.2022.937927

DOI:

Publication date: October 6, 2023

Issue: ICGWS 2023

Type: Poster

Authors

Stefania Savoi1*, Panagiotis Arapitsas2, Anne-Marie Digby3, Fulvio Mattivi2, José Tomas Matus4

1 Department of Agricultural, Forest and Food Sciences, University of Turin, Italy
2 Department of Food Quality and Nutrition, Edmund Mach Foundation, Research and Innovation Centre, San Michele all’Adige, Italy
3 Department of Biotechnology, University of Verona, Italy
4 Institute for Integrative Systems Biology (I2SysBio), Universitat de València-CSIC, Paterna, Spain

Contact the author*

Keywords

data accessibility, data standardization, data sharing, community, grapevine

Tags

2ICGWS | ICGWS | ICGWS 2023 | IVES Conference Series

Citation

Related articles…

White grape must processed by UHPH as an alternative to SO2 addition: Effect on the phenolic composition in three varieties

The quantity and distribution of polyphenols in musts play a fundamental role in the white winemaking. This is because these substances are exposed to oxidation reactions, which are catalysed by the polyphenol oxidase (PPO), leading to a decrease in the quality of the wines produced. PPO is inactivated by SO2, but currently, due to the restrictions of the legislation, other methodologies are being investigated. Ultra-High Pressure Homogenization (UHPH) is a non-thermal physic technology that exerts an ultrahigh pressure pumping (>200 MPa) of a fluid through a valve in a continuous system.

Potential of new genetic resources to improve drought adaptation of grapevine rootstocks

Grapevines are grown mainly as grafts worldwide, but the rootstocks most commonly used were selected between the late 19th and early 20th centuries and are based on reduced genetic diversity[1]. In the context of climate change, it is indeed urgent to diversify the range of rootstocks with genotypes much more adapted to drier environments, than the existing ones[2]. The aim of this study was to evaluate the potential of new genetic resources for grapevine rootstock breeding programs. For this purpose, 12 American and Asian wild Vitis species (3 to 5 accessions per species = 50 accessions) were evaluated for their rooting ability and drought response.

Viticultural heritage in mountain territories of Catalonia: prospecting in the region of Osona, northern Spain

The recovery of ancestral or minority vine varieties has been gaining great interest in recent years, among other reasons because it is likely that some of these varieties, due to the fact that they are found in relict areas, have a greater potential for adaptation to external factors (biotic or abiotic) and can minimize the effects that climate change is causing in viticulture. Varieties that can be grown at altitude are currently being sought to combat rising temperatures and prolonged extreme drought conditions. In Catalonia, the Pyrenean expansion of vineyard cultivation is documented from the 10th century and has been related to the “small climatic optimum” (9th-12th centuries) and also to seigniorial power.[1] But different adverse climatic periods and the arrival of Phylloxera by the late 19th century made many of these crops disappear.[2]

Limiting magnesium availability: a novel approach to managing brettanomyces spoilage in winemaking

Brettanomyces is a world-renowned yeast that negatively impacts the chemical composition of wines through the production of metabolites that negatively impact the sensory properties of the final product. Its resilience in wine conditions and ability to produce off-flavors make it a challenge for winemakers. Currently, the primary control technique involves adding sulfur dioxide (SO2); however, some Brettanomyces strains are developing resistance to this preservative agent. [1] Therefore, new management strategies are necessary to control this spoilage yeast.

The combined use of Lachancea thermotolerans and lactic bacteria in wine technology

The production of most red wines that are sold involves an alcoholic fermentation carried out by yeasts of the Saccharomyces genus, and a subsequent fermentation carried out by lactic bacteria of the Oenococus oeni species after the first one is fully completed. However, the traditional process can face complications, which can be more likely in grape juices with high levels of sugar and pH. Because of climate change, these situations are more frequent in the wine industry. The main hazards in those scenarios are halts or delays in the alcoholic fermentation or the growth of unwanted bacteria while the alcoholic fermentation is not done yet and the wine still has residual sugars.