terclim by ICS banner
IVES 9 IVES Conference Series 9 International Congress on Grapevine and Wine Sciences 9 2ICGWS-2023 9 Effects of long-term drought stress on soil microbial communities from a Syrah cultivar vineyard

Effects of long-term drought stress on soil microbial communities from a Syrah cultivar vineyard

Abstract

Changes in the rainfall and temperature patterns affect the increase of drought periods becoming one of the major constraints to assure agricultural and crop resilience in the Mediterranean regions. Beside the adaptation of agricultural practices, also the microbial compartment associated to plants should be considered in the crop management. It is known that the microbial community change according to several factors such as soil composition, agricultural management system, plant variety and rootstock. Considering the increasing pressure of the biotic and abiotic stresses, it is utmost necessary to also evaluate the effects of drought on the microbiome associated to grapevine in a sensitive Mediterranean region (Alentejo – Portugal).

In this study we characterize the diversity and the structure of the soil microbial community of the drought tolerant Syrah cultivar under long-term irrigation experiment (five years) with three levels (100% ETc – FI; 50% ETc – DI; rain-fed – NI). Metabarcoding of bacteria (16S rRNA subregion) and fungi (ITS region) was applied on the same soil samples. Also soil chemical analysis are being integrated with genomic data.

Although the richness and evenness indexes for alpha diversity did not show strong differences among the irrigation strategies for neither of the targeted microorganisms, beta diversity revealed statistically supported community differentiation. Across all samples the top three bacterial phyla were Pseudomonadota, Actinobacteriota, and Bacteroidota with a total relative abundance of 60%. Regarding the most represented bacterial species across samples, Gaiella occulta, an uncultured actinobacteria first described in deep mineral waters in Portugal, is shown with prevalence in DI samples with more than 10% of total ASVs.

Next, we will predict communities functionalities, bacterial networks, according to soil chemistry data and compare them with the soils’ samples obtained in July 2023.

DOI:

Publication date: October 11, 2023

Issue: ICGWS 2023

Type: Poster

Authors

Gianmaria Califano1,2*, Júlio Maciel1Olfa Zarrouk3,4, Miguel Damásio5, Jose Silvestre5, Ana Margarida Fortes1,2

1Faculdade de Ciências, University of Lisbon, Portugal
2BioISI, Faculdade de Ciências, University of Lisbon, Portugal
3LEAF – Linking Landscape, Environment, Agriculture and Food Research Centre, Associate Laboratory TERRA, ISA-ULisboa, Lisboa, Portugal
4COLAB, Torres Vedras, Portugal
5INIAV, Polo de Dois Portos, Portugal

Contact the author*

Keywords

soil microbiome, metabarcoding, grapevine, Syrah, drought, crop sustainability

Tags

2ICGWS | ICGWS | ICGWS 2023 | IVES Conference Series

Citation

Related articles…

Discovering the process of noble rot: fungal ecology of grape berries during the noble rot transformation in different vineyards of the Tokaj wine region

Botrytis cinerea, a well-known grapevine pathogen, has more than 1200 host plants causing grey rot in grapevine berries. However, it can also result in a desirable phenomenon called noble rot under specific microclimate conditions. An extraordinary demonstration of this natural process can be observed in the creation of aszú wines within Hungary’s Tokaj wine region. Beside B. cinerea other fungi and yeasts are involved in the secondary metabolic development of the grape berry which contributes to the sensory and analytical characterization of noble rot wines.

Metabolomic profiling of botrytized grape berries: unravelling the dynamic chemical transformations during noble rot

Botrytis cinerea, a fungal pathogen commonly known as grey mold, which under specific climatic conditions can develop into a desirable form known as noble rot. In this process the fungus penetrates the grape skin, allowing water evaporation and concentration of sugars and flavors, while profoundly affects the metabolite composition of grapes, leading to the production of unique and desirable compounds in the resulting wines. The result is a unique and complex wine with a luscious sweetness, heightened aromatics, and a distinct character.

Perception, liking and emotional response of tropical fruit aromas in Chardonnay wines

Tropical fruit aromas in wines are thought to be important to wine consumers, although there is little research to confirm this statement. With so many wine styles available, it has become important to understand the qualities that are desirable to consumers and how to achieve those qualities. Thiols and esters are compounds that have been found to cause tropical fruit aromas in chardonnay (ref). Fermentation temperature gradients and skin contact were found to increase these compounds using micro scale fermentations. This work aimed to scale up these fermentations/operations to determine if the desired tropical fruit aromas could still be achieved and if there is a perceivable difference in tropical fruit aromas, liking, and emotional response in the wines at the consumer level.

White grape must processed by UHPH as an alternative to SO2 addition: Effect on the phenolic composition in three varieties

The quantity and distribution of polyphenols in musts play a fundamental role in the white winemaking. This is because these substances are exposed to oxidation reactions, which are catalysed by the polyphenol oxidase (PPO), leading to a decrease in the quality of the wines produced. PPO is inactivated by SO2, but currently, due to the restrictions of the legislation, other methodologies are being investigated. Ultra-High Pressure Homogenization (UHPH) is a non-thermal physic technology that exerts an ultrahigh pressure pumping (>200 MPa) of a fluid through a valve in a continuous system.

Oenological compatibility of biocontrol yeasts applied to wine grapes 

Antagonistic yeasts applied to wine grapes must be compatible with the thereafter winemaking process, avoiding competition with the fermentative Saccharomyces cerevisiae or affecting wine flavour. Therefore, fifteen epiphytic yeasts (6 Metschnikowia sp., 6 Hanseniaspora uvarum, 3 Starmerella bacillaris) previously selected for its biocontrol ability against Alternaria on wine grapes were evaluate for possible competition with S. cerevisiae by the Niche Overlap Index (NOI) employing YNB agar media with 10 mM of 17 different carbonate sources present in wine grapes (proline, asparagine, alanine, glutamic acid, tirosine, arginine, lisine, methionine, glicine, malic acid, tartaric acid, fructose, melibiose, raffinose, rhamnose, sucrose, glucose).